Wall clock time and date at job start Mon Mar 30 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47101 * 2 1 4 4 N 1.46502 * 109.47063 * 180.02562 * 3 2 1 5 5 C 1.35239 * 125.99705 * 125.00698 * 4 3 2 6 6 C 1.35846 * 107.64445 * 180.02562 * 5 4 3 7 7 N 1.40503 * 126.11406 * 179.97438 * 6 5 4 8 8 C 1.34769 * 119.99936 * 179.97438 * 7 6 5 9 9 O 1.21493 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.48732 * 119.99978 * 180.02562 * 8 7 6 11 11 O 1.21513 * 119.99841 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99787 * 180.27494 * 10 8 7 13 13 C 1.36147 * 119.99687 * 179.72231 * 12 10 8 14 14 H 1.08002 * 119.99814 * 0.02562 * 13 12 10 15 15 C 1.39563 * 119.99989 * 180.02562 * 13 12 10 16 16 N 1.31021 * 120.00339 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00121 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47210 * 89.99661 * 17 15 13 19 19 H 1.48496 * 109.47530 * 210.00098 * 17 15 13 20 20 H 1.48501 * 109.47312 * 330.00342 * 17 15 13 21 21 C 1.40338 * 107.77053 * 0.23873 * 6 5 4 22 22 N 1.30820 * 108.21058 * 359.59151 * 21 6 5 23 23 H 1.08996 * 109.47339 * 59.99969 * 1 2 3 24 24 H 1.09012 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47174 * 299.99026 * 1 2 3 26 26 H 1.09004 * 109.47123 * 240.00235 * 2 1 3 27 27 H 1.09004 * 109.47217 * 120.00638 * 2 1 3 28 28 H 1.09000 * 109.47215 * 60.00550 * 3 2 1 29 29 H 1.08995 * 109.47497 * 300.00496 * 3 2 1 30 30 H 1.07999 * 126.17806 * 0.05196 * 5 4 3 31 31 H 0.97000 * 119.99716 * 0.02562 * 7 6 5 32 32 H 0.97000 * 120.00483 * 359.72982 * 12 10 8 33 33 H 0.97004 * 120.00617 * 180.02562 * 16 15 13 34 34 H 1.07999 * 125.88712 * 179.73574 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.2994 2.0702 -0.8971 6 6 5.5889 1.8243 -0.5476 7 7 6.7320 2.2923 -1.2173 8 6 7.9589 1.9720 -0.7607 9 8 8.0765 1.2782 0.2298 10 6 9.1689 2.4678 -1.4692 11 8 9.0513 3.1621 -2.4595 12 7 10.3958 2.1429 -1.0157 13 6 11.5035 2.5921 -1.6676 14 1 11.3989 3.2091 -2.5478 15 6 12.7740 2.2553 -1.1984 16 7 13.8399 2.6879 -1.8254 17 14 12.9548 1.1875 0.3236 18 1 12.9954 -0.2420 -0.0766 19 1 14.2130 1.5399 1.0290 20 1 11.7995 1.4154 1.2284 21 6 5.5752 1.0143 0.5983 22 7 4.3285 0.7918 0.9267 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9685 2.6608 -1.7385 31 1 6.6381 2.8465 -2.0078 32 1 10.4898 1.5889 -0.2250 33 1 14.7230 2.4535 -1.4995 34 1 6.4439 0.6411 1.1202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722366909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:55 Heat of formation + Delta-G solvation = -13.916597 kcal Electronic energy + Delta-G solvation = -19194.985856 eV Core-core repulsion = 15936.023931 eV Total energy + Delta-G solvation = -3258.961924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47888 -41.20075 -39.24257 -36.76664 -36.26245 -35.31321 -33.93284 -32.40756 -30.37824 -28.12961 -26.93356 -24.80710 -23.35873 -22.13750 -21.90536 -21.20112 -20.42818 -18.91584 -18.20882 -17.55638 -16.90913 -16.80580 -16.50684 -16.21364 -15.55143 -15.44947 -15.19418 -14.77622 -14.74082 -14.41047 -14.05705 -13.87414 -13.23600 -13.08497 -12.88371 -12.54961 -12.40397 -12.34056 -12.00162 -11.95741 -11.80099 -11.70510 -11.55770 -10.47325 -10.40522 -10.34374 -8.79014 -8.62208 -6.15812 0.31646 0.89533 1.30026 1.33433 1.35816 1.41341 1.75308 1.83880 2.11058 2.38282 3.05489 3.08179 3.57041 3.77577 3.92075 3.95929 4.10622 4.31347 4.39123 4.51642 4.59885 4.68849 4.85042 5.02114 5.15135 5.21170 5.27153 5.38944 5.69715 5.74488 6.04426 6.09362 6.35721 6.56094 6.64705 6.93281 7.14154 7.60918 8.51940 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049372 B = 0.003509 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.992436 B = 7977.504663 C = 8438.126087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.129 3.871 4 N -0.363 5.363 5 C 0.049 3.951 6 C -0.033 4.033 7 N -0.603 5.603 8 C 0.521 3.479 9 O -0.547 6.547 10 C 0.413 3.587 11 O -0.601 6.601 12 N -0.529 5.529 13 C -0.337 4.337 14 H 0.081 0.919 15 C 0.012 3.988 16 N -0.890 5.890 17 Si 0.947 3.053 18 H -0.252 1.252 19 H -0.258 1.258 20 H -0.247 1.247 21 C 0.032 3.968 22 N -0.310 5.310 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.224 0.776 31 H 0.429 0.571 32 H 0.394 0.606 33 H 0.291 0.709 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 -3.772 4.282 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.010 3.990 4 N -0.146 5.146 5 C -0.100 4.100 6 C -0.137 4.137 7 N -0.249 5.249 8 C 0.304 3.696 9 O -0.425 6.425 10 C 0.197 3.803 11 O -0.489 6.489 12 N -0.167 5.167 13 C -0.466 4.466 14 H 0.099 0.901 15 C -0.193 4.193 16 N -0.527 5.527 17 Si 0.766 3.234 18 H -0.176 1.176 19 H -0.182 1.182 20 H -0.171 1.171 21 C -0.153 4.153 22 N -0.133 5.133 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.151 0.849 30 H 0.241 0.759 31 H 0.268 0.732 32 H 0.230 0.770 33 H 0.101 0.899 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -25.306 -4.344 5.116 26.181 hybrid contribution 1.432 0.153 -0.260 1.463 sum -23.874 -4.191 4.856 24.721 Atomic orbital electron populations 1.21675 0.92551 1.02831 1.03141 1.21759 0.97830 0.95257 1.02354 1.22218 0.71219 0.99392 1.06134 1.48712 1.07481 1.38366 1.20084 1.22462 0.88053 1.01245 0.98228 1.18018 0.86893 1.08858 0.99935 1.42189 1.02009 1.50449 1.30244 1.19887 0.84688 0.80769 0.84217 1.90581 1.86803 1.38598 1.26518 1.19294 0.84242 0.88424 0.88306 1.90613 1.86175 1.43251 1.28833 1.41676 1.04952 1.43845 1.26207 1.19187 0.83791 1.31948 1.11717 0.90148 1.26064 0.93783 0.98029 1.01460 1.69544 0.99358 1.42903 1.40943 0.85608 0.80147 0.79464 0.78156 1.17643 1.18195 1.17056 1.24395 0.95611 0.98779 0.96551 1.77289 1.01055 1.20089 1.14879 0.90867 0.92092 0.91682 0.92214 0.92689 0.88766 0.84916 0.75938 0.73216 0.76990 0.89894 0.79478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.91 71.98 0.71 -0.33 16 2 C -0.13 -1.66 6.12 30.59 0.19 -1.47 16 3 C 0.13 1.48 6.51 86.38 0.56 2.04 16 4 N -0.36 -7.53 3.69 -347.40 -1.28 -8.81 16 5 C 0.05 0.99 11.49 83.61 0.96 1.95 16 6 C -0.03 -0.95 6.90 37.71 0.26 -0.69 16 7 N -0.60 -19.32 5.45 -305.91 -1.67 -20.99 16 8 C 0.52 20.94 7.83 87.05 0.68 21.62 16 9 O -0.55 -22.84 13.62 -3.69 -0.05 -22.89 16 10 C 0.41 19.81 7.81 87.05 0.68 20.49 16 11 O -0.60 -31.68 16.03 -3.76 -0.06 -31.74 16 12 N -0.53 -26.61 5.06 -308.96 -1.56 -28.18 16 13 C -0.34 -19.27 10.16 84.34 0.86 -18.41 16 14 H 0.08 5.26 7.37 -2.91 -0.02 5.24 16 15 C 0.01 0.64 5.51 85.13 0.47 1.11 16 16 N -0.89 -50.30 13.94 21.76 0.30 -49.99 16 17 Si 0.95 39.14 27.74 68.60 1.90 41.04 16 18 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.25 -9.64 6.53 99.48 0.65 -8.99 16 21 C 0.03 1.04 10.84 85.35 0.93 1.97 16 22 N -0.31 -8.98 12.40 -56.72 -0.70 -9.68 16 23 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.93 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.13 0.57 8.07 -2.39 -0.02 0.55 16 30 H 0.22 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.43 12.09 8.28 -92.71 -0.77 11.32 16 32 H 0.39 18.14 5.22 -92.71 -0.48 17.66 16 33 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 34 H 0.19 6.64 5.92 -2.91 -0.02 6.62 16 Total: -1.00 -72.20 301.81 3.02 -69.18 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.16 Total: 33.78 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 6.30 Total: 28.27 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -4.91 Total: -117.65 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -0.11 Total: -54.63 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.04 kcal Total: -72.20 3.02 -69.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722366909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.264 kcal (2) G-P(sol) polarization free energy of solvation -72.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds