Wall clock time and date at job start Mon Mar 30 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46500 * 120.00193 * 2 1 4 4 C 1.50702 * 109.47297 * 270.00083 * 3 2 1 5 5 C 1.39873 * 125.89649 * 95.01525 * 4 3 2 6 6 C 1.35320 * 107.91752 * 179.97438 * 5 4 3 7 7 N 1.34951 * 107.74463 * 0.02562 * 6 5 4 8 8 C 1.46503 * 126.03528 * 179.97438 * 7 6 5 9 9 N 1.30837 * 125.89745 * 274.97563 * 4 3 2 10 10 C 1.34783 * 120.00105 * 180.02562 * 2 1 3 11 11 O 1.21438 * 120.00223 * 176.46402 * 10 2 1 12 12 C 1.48830 * 119.99761 * 356.46269 * 10 2 1 13 13 O 1.21503 * 119.99892 * 5.94109 * 12 10 2 14 14 N 1.34770 * 119.99994 * 185.93500 * 12 10 2 15 15 C 1.36118 * 119.99978 * 180.02562 * 14 12 10 16 16 H 1.07995 * 120.00550 * 0.02562 * 15 14 12 17 17 C 1.39591 * 120.00180 * 180.02562 * 15 14 12 18 18 N 1.31018 * 119.99584 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00352 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47063 * 90.00131 * 19 17 15 21 21 H 1.48497 * 109.47244 * 210.00025 * 19 17 15 22 22 H 1.48497 * 109.46774 * 330.00204 * 19 17 15 23 23 H 1.09002 * 109.47326 * 95.99022 * 1 2 3 24 24 H 1.08999 * 109.47382 * 215.98880 * 1 2 3 25 25 H 1.09006 * 109.47189 * 335.99166 * 1 2 3 26 26 H 1.09002 * 109.47012 * 149.99718 * 3 2 1 27 27 H 1.09000 * 109.47131 * 30.00283 * 3 2 1 28 28 H 1.07998 * 126.04054 * 359.97438 * 5 4 3 29 29 H 1.07992 * 126.12594 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.46937 * 270.02404 * 8 7 6 31 31 H 1.09004 * 109.46621 * 30.02601 * 8 7 6 32 32 H 1.08999 * 109.46620 * 150.02324 * 8 7 6 33 33 H 0.97002 * 120.00164 * 0.02562 * 14 12 10 34 34 H 0.96997 * 120.00103 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6545 2.5858 -2.1610 6 6 2.2125 2.7200 -3.3865 7 7 3.3201 1.9497 -3.4207 8 6 4.2289 1.7971 -4.5596 9 7 3.4476 1.3222 -2.1747 10 6 2.1389 -1.1672 -0.0005 11 8 3.3515 -1.1682 -0.0654 12 6 1.3968 -2.4549 0.0784 13 8 0.1826 -2.4601 0.0345 14 7 2.0717 -3.6153 0.1986 15 6 1.3930 -4.7930 0.2702 16 1 0.3138 -4.7978 0.2304 17 6 2.0919 -5.9949 0.3952 18 7 3.4012 -5.9892 0.4440 19 14 1.1607 -7.6112 0.4929 20 1 0.9664 -8.1540 -0.8756 21 1 1.9377 -8.5820 1.3047 22 1 -0.1624 -7.3826 1.1271 23 1 -0.3634 -0.1072 -1.0221 24 1 -0.3634 -0.8315 0.6039 25 1 -0.3634 0.9388 0.4181 26 1 3.1499 1.1383 0.5139 27 1 1.6084 2.0284 0.5139 28 1 0.7551 3.0736 -1.8155 29 1 1.8385 3.3336 -4.1926 30 1 3.8934 0.9687 -5.1835 31 1 4.2332 2.7156 -5.1465 32 1 5.2360 1.5935 -4.1959 33 1 3.0410 -3.6112 0.2339 34 1 3.8870 -6.8243 0.5305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724025207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:29 Heat of formation + Delta-G solvation = 1.247008 kcal Electronic energy + Delta-G solvation = -19881.786650 eV Core-core repulsion = 16623.482269 eV Total energy + Delta-G solvation = -3258.304381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14915 -41.30521 -39.12142 -37.15932 -36.01475 -34.20149 -33.41889 -31.10581 -29.94796 -28.10636 -27.35245 -26.33225 -23.88112 -22.01389 -21.22722 -20.54835 -19.90766 -18.32398 -17.96282 -17.64489 -17.00656 -16.67734 -16.34130 -15.85002 -15.68047 -15.34690 -14.85180 -14.63479 -14.41920 -13.99307 -13.72367 -13.60260 -13.45052 -13.25672 -13.11352 -12.95757 -12.78236 -12.54325 -12.09602 -11.98582 -11.63392 -11.47641 -10.37891 -10.27234 -9.96084 -9.72981 -9.46561 -8.64430 -6.09562 0.62189 0.93390 1.40234 1.46735 1.53114 1.59969 1.71787 2.11573 2.33283 2.38463 3.15286 3.17216 3.60582 3.87970 3.99200 4.16550 4.24986 4.38466 4.45220 4.57788 4.63839 4.78420 4.83069 4.90325 5.13154 5.17583 5.27617 5.53985 5.66555 5.70064 6.10224 6.22197 6.34845 6.79086 6.82375 7.00057 7.29581 7.81446 8.51727 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.004510 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.696899 B = 6206.631019 C = 6674.812453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.582 5.582 3 C 0.192 3.808 4 C 0.034 3.966 5 C -0.272 4.272 6 C 0.056 3.944 7 N -0.388 5.388 8 C 0.094 3.906 9 N -0.331 5.331 10 C 0.509 3.491 11 O -0.559 6.559 12 C 0.393 3.607 13 O -0.599 6.599 14 N -0.515 5.515 15 C -0.344 4.344 16 H 0.101 0.899 17 C -0.007 4.007 18 N -0.900 5.900 19 Si 1.012 2.988 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.261 1.261 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.176 0.824 29 H 0.219 0.781 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 17.386 -6.878 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.315 5.315 3 C 0.068 3.932 4 C -0.132 4.132 5 C -0.302 4.302 6 C -0.090 4.090 7 N -0.170 5.170 8 C -0.047 4.047 9 N -0.155 5.155 10 C 0.294 3.706 11 O -0.438 6.438 12 C 0.178 3.822 13 O -0.488 6.488 14 N -0.149 5.149 15 C -0.474 4.474 16 H 0.119 0.881 17 C -0.211 4.211 18 N -0.538 5.538 19 Si 0.832 3.168 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.185 1.185 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.193 0.807 29 H 0.236 0.764 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.901 16.537 -7.128 18.108 hybrid contribution -0.116 -0.456 -0.083 0.478 sum -2.017 16.081 -7.211 17.738 Atomic orbital electron populations 1.22349 0.76293 1.05093 1.02612 1.47655 1.08898 1.04001 1.70901 1.20046 0.98589 0.84822 0.89700 1.22953 0.94321 0.98015 0.97947 1.21767 1.05747 1.07931 0.94713 1.23280 0.88479 0.96827 1.00433 1.49011 1.21960 1.34913 1.11165 1.22146 0.92906 1.05190 0.84410 1.77501 1.25039 1.20403 0.92531 1.20289 0.87004 0.86152 0.77148 1.90695 1.14897 1.87874 1.50304 1.19555 0.87985 0.85170 0.89464 1.90446 1.13403 1.86332 1.58640 1.41684 1.10158 1.05222 1.57809 1.19996 0.93801 0.83386 1.50168 0.88087 1.26580 0.96463 1.03560 0.94488 1.69572 1.07974 1.30946 1.45324 0.84671 0.78104 0.74976 0.79003 1.19124 1.19172 1.18475 0.93868 0.89394 0.87523 0.90589 0.83551 0.80708 0.76443 0.90680 0.85393 0.90174 0.76814 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.45 9.58 127.77 1.22 3.68 16 2 N -0.58 -21.54 2.86 -853.43 -2.44 -23.98 16 3 C 0.19 5.77 5.98 85.63 0.51 6.28 16 4 C 0.03 1.08 6.80 43.10 0.29 1.37 16 5 C -0.27 -6.26 10.74 21.99 0.24 -6.02 16 6 C 0.06 1.11 11.49 83.54 0.96 2.07 16 7 N -0.39 -10.17 4.01 -369.56 -1.48 -11.66 16 8 C 0.09 1.59 11.47 127.77 1.47 3.05 16 9 N -0.33 -12.06 12.58 -47.38 -0.60 -12.65 16 10 C 0.51 24.36 7.71 87.08 0.67 25.03 16 11 O -0.56 -29.29 16.09 -3.52 -0.06 -29.35 16 12 C 0.39 21.07 7.70 87.08 0.67 21.74 16 13 O -0.60 -32.47 12.69 -3.73 -0.05 -32.52 16 14 N -0.51 -29.54 5.24 -308.88 -1.62 -31.16 16 15 C -0.34 -19.84 9.67 84.35 0.82 -19.02 16 16 H 0.10 5.91 7.15 -2.91 -0.02 5.89 16 17 C -0.01 -0.39 5.51 85.14 0.47 0.08 16 18 N -0.90 -50.09 13.03 21.77 0.28 -49.81 16 19 Si 1.01 41.66 29.56 68.60 2.03 43.69 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 3.34 5.36 -2.53 -0.01 3.33 16 25 H 0.11 2.21 7.83 -2.38 -0.02 2.19 16 26 H 0.08 2.57 7.47 -2.39 -0.02 2.55 16 27 H 0.15 2.83 7.85 -2.39 -0.02 2.81 16 28 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.22 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.40 23.41 7.36 -92.71 -0.68 22.72 16 34 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 Total: -1.00 -79.18 304.04 3.84 -75.34 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.45 Total: 33.84 kcal Atomic # 6 Polarization: 30.94 SS G_CDS: 7.32 Total: 38.26 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.85 Total: -129.26 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -0.10 Total: -61.87 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -79.18 3.84 -75.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724025207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.583 kcal (2) G-P(sol) polarization free energy of solvation -79.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds