Wall clock time and date at job start Mon Mar 30 2020 04:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34431 * 126.81782 * 2 1 4 4 N 1.36426 * 109.08360 * 180.16208 * 3 2 1 5 5 C 1.46507 * 124.80410 * 179.81793 * 4 3 2 6 6 C 1.50697 * 109.47005 * 269.72210 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73077 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 C 1.50699 * 109.46700 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00629 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99714 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00098 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99896 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47258 * 59.99641 * 14 12 10 16 16 H 1.48510 * 109.47258 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47373 * 299.99470 * 14 12 10 18 18 C 1.34620 * 110.38530 * 359.55983 * 4 3 2 19 19 C 1.37845 * 108.20340 * 0.26239 * 18 4 3 20 20 C 1.47110 * 127.02319 * 179.97438 * 19 18 4 21 21 O 1.21555 * 120.00124 * 180.02562 * 20 19 18 22 22 O 1.34789 * 119.99861 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.46837 * 270.31510 * 1 2 3 24 24 H 1.09010 * 109.46548 * 30.31166 * 1 2 3 25 25 H 1.08997 * 109.47328 * 150.30645 * 1 2 3 26 26 H 1.08000 * 125.45722 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46566 * 149.73005 * 5 4 3 28 28 H 1.08993 * 109.47390 * 29.72795 * 5 4 3 29 29 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 30 30 H 1.08998 * 109.47134 * 299.99552 * 9 8 6 31 31 H 1.08994 * 109.47397 * 59.99843 * 9 8 6 32 32 H 0.97003 * 119.99632 * 179.97438 * 13 12 10 33 33 H 1.07996 * 125.89931 * 180.28360 * 18 4 3 34 34 H 0.96707 * 117.00006 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3126 1.0762 0.0000 4 7 3.6121 0.6606 -0.0036 5 6 4.7750 1.5517 -0.0086 6 6 5.1733 1.8499 -1.4311 7 8 4.5505 1.3619 -2.3503 8 7 6.2254 2.6542 -1.6818 9 6 6.6162 2.9393 -3.0646 10 6 7.8124 3.8559 -3.0696 11 1 8.2386 4.1928 -2.1361 12 6 8.3621 4.2654 -4.2659 13 7 7.8429 3.8556 -5.4026 14 14 9.8444 5.4022 -4.2721 15 1 10.9734 4.7473 -3.5639 16 1 10.2407 5.6912 -5.6739 17 1 9.4977 6.6714 -3.5837 18 6 3.6744 -0.6841 0.0036 19 6 2.3862 -1.1749 0.0063 20 6 1.9766 -2.5877 0.0135 21 8 0.7963 -2.8784 0.0147 22 8 2.9101 -3.5600 0.0187 23 1 -0.3633 0.0057 1.0276 24 1 -0.3633 0.8873 -0.5187 25 1 -0.3634 -0.8927 -0.5090 26 1 1.9838 2.1049 0.0004 27 1 5.6048 1.0688 0.5074 28 1 4.5223 2.4817 0.5005 29 1 6.7237 3.0443 -0.9466 30 1 6.8709 2.0076 -3.5696 31 1 5.7876 3.4198 -3.5847 32 1 8.2295 4.1440 -6.2442 33 1 4.5775 -1.2762 0.0071 34 1 2.5926 -4.4735 0.0229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724628509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:03 Heat of formation + Delta-G solvation = -87.264883 kcal Electronic energy + Delta-G solvation = -19201.571969 eV Core-core repulsion = 15907.136673 eV Total energy + Delta-G solvation = -3294.435296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40750 -39.60418 -38.71899 -35.89186 -34.42886 -33.48146 -32.47811 -30.58360 -28.87884 -27.17839 -25.82570 -23.60478 -22.41467 -20.52242 -19.98932 -19.31266 -17.84466 -17.61754 -17.15917 -16.03846 -15.77320 -15.42646 -15.08675 -14.83157 -14.39273 -13.94619 -13.79517 -13.24677 -13.05395 -12.93488 -12.77117 -12.38837 -12.21353 -12.07378 -11.70643 -11.46894 -11.41295 -11.10695 -10.95939 -10.43157 -10.40987 -9.55997 -9.50875 -8.86734 -8.48215 -8.19767 -8.11142 -6.26855 -4.35366 1.53583 2.33020 2.68256 2.97634 3.18164 3.23482 3.24829 3.30935 3.38697 3.84756 4.25968 4.63124 4.82618 4.94216 4.96138 5.09383 5.18631 5.22221 5.47541 5.67884 5.81661 5.87097 6.13816 6.29995 6.57885 6.78398 7.00684 7.08178 7.14826 7.21175 7.35557 7.50483 7.83597 8.10499 8.36300 8.59474 8.83195 9.31478 10.83093 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038750 B = 0.003357 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.410608 B = 8339.477897 C = 8537.521197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.106 4.106 3 C -0.010 4.010 4 N -0.414 5.414 5 C 0.076 3.924 6 C 0.477 3.523 7 O -0.535 6.535 8 N -0.705 5.705 9 C 0.251 3.749 10 C -0.548 4.548 11 H 0.063 0.937 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.906 3.094 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.096 3.904 19 C -0.235 4.235 20 C 0.559 3.441 21 O -0.529 6.529 22 O -0.520 6.520 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.168 0.832 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.393 0.607 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.177 0.823 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -6.760 14.472 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.136 4.136 4 N -0.087 5.087 5 C -0.049 4.049 6 C 0.259 3.741 7 O -0.412 6.412 8 N -0.355 5.355 9 C 0.130 3.870 10 C -0.587 4.587 11 H 0.082 0.918 12 C -0.139 4.139 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.042 4.042 19 C -0.243 4.243 20 C 0.406 3.594 21 O -0.420 6.420 22 O -0.332 6.332 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.185 0.815 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.225 0.775 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.194 0.806 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.428 -6.487 13.551 16.760 hybrid contribution 1.054 0.269 0.129 1.095 sum -6.374 -6.217 13.680 16.323 Atomic orbital electron populations 1.20187 0.89224 1.02702 1.01709 1.20372 0.95299 0.89782 1.05641 1.21481 0.81525 0.99370 1.11191 1.43123 1.06144 1.05610 1.53813 1.21961 0.88741 0.96353 0.97873 1.20551 0.82229 0.81013 0.90258 1.90770 1.53331 1.51461 1.45631 1.46455 1.29666 1.47122 1.12217 1.19164 0.95439 0.96606 0.75777 1.21148 1.13940 1.30456 0.93113 0.91840 1.24958 0.97532 0.96269 0.95182 1.69960 1.40689 1.43802 0.97619 0.86447 0.82205 0.80773 0.77329 1.20007 1.20995 1.20011 1.22283 0.98650 0.82951 1.00280 1.19433 0.93028 0.89067 1.22754 1.19887 0.82812 0.85287 0.71444 1.90834 1.18944 1.83990 1.48241 1.84602 1.42312 1.19770 1.86469 0.91920 0.92058 0.90631 0.81481 0.86219 0.86157 0.77458 0.95347 0.95358 0.92232 0.80606 0.73428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.98 36.01 0.36 -0.64 16 2 C -0.11 -1.51 6.35 -102.53 -0.65 -2.16 16 3 C -0.01 -0.13 11.25 -16.85 -0.19 -0.32 16 4 N -0.41 -5.43 2.17 -118.13 -0.26 -5.69 16 5 C 0.08 0.85 6.48 -5.19 -0.03 0.82 16 6 C 0.48 8.33 7.90 -10.98 -0.09 8.24 16 7 O -0.53 -12.16 16.43 5.56 0.09 -12.07 16 8 N -0.71 -13.10 5.55 -61.48 -0.34 -13.44 16 9 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 10 C -0.55 -14.12 9.28 -34.44 -0.32 -14.44 16 11 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.88 -25.33 13.29 55.43 0.74 -24.59 16 14 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.10 1.28 11.22 -16.47 -0.18 1.10 16 19 C -0.23 -3.45 6.32 -103.01 -0.65 -4.10 16 20 C 0.56 7.99 8.32 34.33 0.29 8.28 16 21 O -0.53 -8.65 16.12 -19.31 -0.31 -8.96 16 22 O -0.52 -5.68 13.28 -40.73 -0.54 -6.22 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 25 H 0.07 1.04 6.86 -51.93 -0.36 0.69 16 26 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.12 0.95 8.13 -51.93 -0.42 0.52 16 28 H 0.12 0.97 8.13 -51.93 -0.42 0.54 16 29 H 0.39 5.88 8.32 -40.82 -0.34 5.54 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.41 2.50 9.11 45.56 0.42 2.92 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -35.53 310.81 -5.75 -41.28 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.20 Total: 5.32 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.60 Total: 4.64 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.14 Total: -43.73 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.76 Total: -27.25 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.53 -5.75 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724628509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.987 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds