Wall clock time and date at job start Mon Mar 30 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34789 * 116.99843 * 2 1 4 4 O 1.21555 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.47110 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.37845 * 127.02319 * 0.02562 * 5 3 2 7 7 N 1.34620 * 108.20340 * 179.97438 * 6 5 3 8 8 C 1.46507 * 124.81006 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47005 * 90.01676 * 8 7 6 10 10 O 1.21291 * 120.00763 * 359.73081 * 9 8 7 11 11 N 1.34784 * 119.99774 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99968 * 179.72830 * 11 9 8 13 13 H 1.08005 * 120.00127 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00107 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00407 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46940 * 60.00199 * 16 14 12 18 18 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47121 * 300.00728 * 16 14 12 20 20 C 1.36426 * 110.38530 * 0.26239 * 7 6 5 21 21 C 1.34431 * 109.08360 * 359.55983 * 20 7 6 22 22 C 1.50703 * 126.81782 * 180.16208 * 21 20 7 23 23 H 1.08999 * 109.47423 * 60.00101 * 1 2 3 24 24 H 1.08998 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46853 * 300.00133 * 1 2 3 26 26 H 1.07996 * 125.89729 * 359.96280 * 6 5 3 27 27 H 1.09001 * 109.46566 * 330.02472 * 8 7 6 28 28 H 1.08993 * 109.47390 * 210.02262 * 8 7 6 29 29 H 0.97005 * 119.99846 * 359.72750 * 11 9 8 30 30 H 0.96990 * 120.00373 * 180.02562 * 15 14 12 31 31 H 1.08000 * 125.45901 * 179.70421 * 20 7 6 32 32 H 1.08997 * 109.46837 * 270.31510 * 22 21 20 33 33 H 1.09010 * 109.46548 * 30.31166 * 22 21 20 34 34 H 1.08997 * 109.47328 * 150.30645 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4019 2.2204 -0.0005 5 6 3.5330 1.2780 -0.0006 6 6 4.4195 0.2224 -0.0016 7 7 5.6692 0.7228 -0.0024 8 6 6.8928 -0.0831 -0.0042 9 6 7.3112 -0.3579 -1.4256 10 8 6.6496 0.0724 -2.3466 11 7 8.4174 -1.0870 -1.6734 12 6 8.7949 -1.3417 -2.9665 13 1 8.2057 -0.9586 -3.7866 14 6 9.9357 -2.0929 -3.2220 15 7 10.6523 -2.5596 -2.2242 16 14 10.4498 -2.4407 -4.9839 17 1 10.6997 -1.1579 -5.6889 18 1 11.6904 -3.2568 -4.9856 19 1 9.3676 -3.1842 -5.6777 20 6 5.6351 2.0866 0.0040 21 6 4.3541 2.4942 -0.0007 22 6 3.8593 3.9177 0.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.1568 -0.8251 -0.0016 27 1 6.7069 -1.0268 0.5087 28 1 7.6861 0.4597 0.5097 29 1 8.9463 -1.4314 -0.9369 30 1 11.4487 -3.0836 -2.4025 31 1 6.4988 2.7349 0.0094 32 1 3.7409 4.2605 1.0280 33 1 4.5803 4.5532 -0.5142 34 1 2.8990 3.9689 -0.5130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724640986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:00 Heat of formation + Delta-G solvation = -76.509996 kcal Electronic energy + Delta-G solvation = -19466.146216 eV Core-core repulsion = 16172.177287 eV Total energy + Delta-G solvation = -3293.968929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12626 -39.68928 -38.14800 -36.08676 -34.22546 -33.10471 -31.46671 -30.43549 -28.62168 -27.23260 -25.92248 -24.58187 -22.51800 -20.20299 -19.56119 -19.14904 -18.18997 -17.28272 -16.62765 -16.44569 -16.05875 -15.45970 -14.78067 -14.35002 -14.02405 -13.87518 -13.57846 -13.25437 -13.02763 -12.86843 -12.74923 -12.28179 -12.04127 -12.00093 -11.72681 -11.67236 -11.22274 -11.14763 -10.64291 -10.56182 -10.38361 -10.17911 -9.69767 -8.90066 -8.18824 -8.15532 -7.94738 -6.60071 -4.02041 1.75064 2.59475 2.87142 3.07949 3.17031 3.18794 3.23772 3.56013 3.59212 4.04184 4.70253 4.89405 5.09398 5.14290 5.16360 5.17145 5.21184 5.34599 5.36299 5.52010 5.61176 5.76038 5.96049 5.98033 6.03624 6.28195 6.41969 6.65585 7.01422 7.28196 7.38426 7.42104 7.83167 8.13502 8.36510 8.97214 9.27840 9.77253 10.56543 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.003934 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.457053 B = 7116.469636 C = 7492.643942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.543 3.457 4 O -0.524 6.524 5 C -0.239 4.239 6 C 0.098 3.902 7 N -0.405 5.405 8 C 0.085 3.915 9 C 0.414 3.586 10 O -0.577 6.577 11 N -0.550 5.550 12 C -0.305 4.305 13 H 0.104 0.896 14 C 0.028 3.972 15 N -0.896 5.896 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.007 4.007 21 C -0.111 4.111 22 C -0.078 4.078 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.175 0.825 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.394 0.606 30 H 0.275 0.725 31 H 0.165 0.835 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 3.616 8.272 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.279 6.279 3 C 0.391 3.609 4 O -0.415 6.415 5 C -0.247 4.247 6 C -0.041 4.041 7 N -0.076 5.076 8 C -0.041 4.041 9 C 0.198 3.802 10 O -0.461 6.461 11 N -0.186 5.186 12 C -0.434 4.434 13 H 0.122 0.878 14 C -0.175 4.175 15 N -0.536 5.536 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.133 4.133 21 C -0.116 4.116 22 C -0.136 4.136 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.192 0.808 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.183 0.817 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.998 3.907 7.646 13.179 hybrid contribution 0.588 -0.572 -0.472 0.947 sum -9.409 3.335 7.174 12.293 Atomic orbital electron populations 1.23160 0.76885 1.03178 1.02236 1.86582 1.22845 1.33439 1.85035 1.20228 0.87900 0.80857 0.71916 1.90766 1.66704 1.35919 1.48068 1.19423 0.88096 0.93816 1.23383 1.22236 0.82737 0.98874 1.00240 1.43139 1.05592 1.06269 1.52637 1.21815 0.86150 0.97099 0.98988 1.19898 0.84825 0.85882 0.89575 1.90622 1.55005 1.55516 1.44976 1.41805 1.22246 1.45321 1.09220 1.19682 1.08616 1.31136 0.83990 0.87770 1.25305 0.95917 0.96341 0.99969 1.69586 1.17042 1.35446 1.31570 0.85871 0.77958 0.78715 0.81480 1.19716 1.20783 1.19710 1.21436 0.98154 0.82765 1.10963 1.20308 0.90867 0.94052 1.06360 1.20151 1.01521 0.90399 1.01492 0.92157 0.88471 0.92229 0.80826 0.87290 0.87239 0.77223 0.91486 0.81726 0.92137 0.92245 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.57 101.05 1.07 1.48 16 2 O -0.36 -5.26 10.42 -40.73 -0.42 -5.69 16 3 C 0.54 9.12 7.95 34.33 0.27 9.39 16 4 O -0.52 -9.53 15.12 -19.31 -0.29 -9.82 16 5 C -0.24 -4.07 6.32 -103.01 -0.65 -4.72 16 6 C 0.10 1.57 11.22 -16.47 -0.18 1.39 16 7 N -0.40 -6.55 2.17 -118.13 -0.26 -6.81 16 8 C 0.09 1.29 6.48 -5.19 -0.03 1.26 16 9 C 0.41 8.97 7.85 -10.98 -0.09 8.88 16 10 O -0.58 -15.13 16.01 5.55 0.09 -15.04 16 11 N -0.55 -12.81 5.29 -10.96 -0.06 -12.87 16 12 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 13 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 14 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 15 N -0.90 -22.98 13.05 55.50 0.72 -22.25 16 16 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.01 -0.11 11.25 -16.85 -0.19 -0.30 16 21 C -0.11 -1.81 6.35 -102.53 -0.65 -2.46 16 22 C -0.08 -1.10 9.98 36.01 0.36 -0.74 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 27 H 0.11 1.34 8.13 -51.93 -0.42 0.92 16 28 H 0.11 1.36 8.13 -51.93 -0.42 0.94 16 29 H 0.39 8.56 7.90 -40.82 -0.32 8.23 16 30 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.17 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.07 1.13 6.86 -51.93 -0.36 0.78 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -32.81 309.36 -4.91 -37.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.99 Total: 8.37 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.34 Total: 6.59 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.41 Total: -41.93 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.63 Total: -30.55 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.81 -4.91 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724640986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.790 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds