Wall clock time and date at job start Mon Mar 30 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34789 * 116.99843 * 2 1 4 4 O 1.21555 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.47110 * 119.99861 * 180.02562 * 3 2 1 6 6 C 1.37845 * 127.02319 * 0.02562 * 5 3 2 7 7 N 1.34620 * 108.20340 * 179.97438 * 6 5 3 8 8 C 1.46507 * 124.81006 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47005 * 90.01676 * 8 7 6 10 10 O 1.21291 * 120.00763 * 359.73081 * 9 8 7 11 11 N 1.34784 * 119.99774 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99968 * 179.72830 * 11 9 8 13 13 H 1.08005 * 120.00127 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00107 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00407 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46940 * 60.00199 * 16 14 12 18 18 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47121 * 300.00728 * 16 14 12 20 20 C 1.36426 * 110.38530 * 0.26239 * 7 6 5 21 21 C 1.34431 * 109.08360 * 359.55983 * 20 7 6 22 22 C 1.50703 * 126.81782 * 180.16208 * 21 20 7 23 23 H 1.08999 * 109.47423 * 60.00101 * 1 2 3 24 24 H 1.08998 * 109.46822 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46853 * 300.00133 * 1 2 3 26 26 H 1.07996 * 125.89729 * 359.96280 * 6 5 3 27 27 H 1.09001 * 109.46566 * 330.02472 * 8 7 6 28 28 H 1.08993 * 109.47390 * 210.02262 * 8 7 6 29 29 H 0.97005 * 119.99846 * 359.72750 * 11 9 8 30 30 H 0.96990 * 120.00373 * 180.02562 * 15 14 12 31 31 H 1.08000 * 125.45901 * 179.70421 * 20 7 6 32 32 H 1.08997 * 109.46837 * 270.31510 * 22 21 20 33 33 H 1.09010 * 109.46548 * 30.31166 * 22 21 20 34 34 H 1.08997 * 109.47328 * 150.30645 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4019 2.2204 -0.0005 5 6 3.5330 1.2780 -0.0006 6 6 4.4195 0.2224 -0.0016 7 7 5.6692 0.7228 -0.0024 8 6 6.8928 -0.0831 -0.0042 9 6 7.3112 -0.3579 -1.4256 10 8 6.6496 0.0724 -2.3466 11 7 8.4174 -1.0870 -1.6734 12 6 8.7949 -1.3417 -2.9665 13 1 8.2057 -0.9586 -3.7866 14 6 9.9357 -2.0929 -3.2220 15 7 10.6523 -2.5596 -2.2242 16 14 10.4498 -2.4407 -4.9839 17 1 10.6997 -1.1579 -5.6889 18 1 11.6904 -3.2568 -4.9856 19 1 9.3676 -3.1842 -5.6777 20 6 5.6351 2.0866 0.0040 21 6 4.3541 2.4942 -0.0007 22 6 3.8593 3.9177 0.0001 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.1568 -0.8251 -0.0016 27 1 6.7069 -1.0268 0.5087 28 1 7.6861 0.4597 0.5097 29 1 8.9463 -1.4314 -0.9369 30 1 11.4487 -3.0836 -2.4025 31 1 6.4988 2.7349 0.0094 32 1 3.7409 4.2605 1.0280 33 1 4.5803 4.5532 -0.5142 34 1 2.8990 3.9689 -0.5130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724640986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:00 Heat of formation + Delta-G solvation = -97.406044 kcal Electronic energy + Delta-G solvation = -19467.052337 eV Core-core repulsion = 16172.177287 eV Total energy + Delta-G solvation = -3294.875050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36131 -40.91822 -39.87758 -37.29600 -36.09027 -34.41746 -33.33792 -31.63846 -29.88162 -28.24819 -27.38174 -26.14489 -23.80316 -21.56622 -21.04403 -20.36074 -20.03251 -18.52115 -18.10566 -17.81209 -17.22269 -16.80036 -16.51578 -15.85637 -15.63056 -15.33687 -14.83336 -14.42664 -14.37830 -14.00615 -13.96231 -13.59269 -13.47694 -13.30791 -13.12784 -12.91332 -12.79279 -12.48395 -12.38948 -12.14879 -11.72141 -11.57247 -11.43872 -10.63738 -10.08948 -9.49463 -9.16116 -8.52051 -6.01234 0.48996 1.34108 1.36493 1.42856 1.52124 1.73076 1.91616 2.06745 2.28419 2.31216 3.13234 3.14243 3.82145 3.94911 4.02984 4.21066 4.25640 4.31221 4.36251 4.37455 4.42628 4.62262 4.74338 4.82539 4.93620 5.16735 5.26501 5.37181 5.46546 5.80549 5.90031 6.05913 6.24007 6.51591 6.90836 7.05867 7.44699 7.99761 8.63809 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.003934 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.457053 B = 7116.469636 C = 7492.643942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.541 3.459 4 O -0.547 6.547 5 C -0.264 4.264 6 C 0.095 3.905 7 N -0.411 5.411 8 C 0.098 3.902 9 C 0.417 3.583 10 O -0.627 6.627 11 N -0.558 5.558 12 C -0.337 4.337 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.912 5.912 16 Si 0.988 3.012 17 H -0.273 1.273 18 H -0.269 1.269 19 H -0.273 1.273 20 C -0.014 4.014 21 C -0.129 4.129 22 C -0.074 4.074 23 H 0.057 0.943 24 H 0.132 0.868 25 H 0.064 0.936 26 H 0.193 0.807 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.402 0.598 30 H 0.280 0.720 31 H 0.187 0.813 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 3.101 9.130 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C 0.390 3.610 4 O -0.440 6.440 5 C -0.273 4.273 6 C -0.043 4.043 7 N -0.083 5.083 8 C -0.027 4.027 9 C 0.203 3.797 10 O -0.514 6.514 11 N -0.195 5.195 12 C -0.467 4.467 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.552 5.552 16 Si 0.812 3.188 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.199 1.199 20 C -0.139 4.139 21 C -0.134 4.134 22 C -0.131 4.131 23 H 0.076 0.924 24 H 0.150 0.850 25 H 0.083 0.917 26 H 0.210 0.790 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.237 0.763 30 H 0.090 0.910 31 H 0.204 0.796 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.607 3.375 8.536 13.287 hybrid contribution 0.369 -0.407 -0.718 0.904 sum -9.239 2.968 7.818 12.461 Atomic orbital electron populations 1.23510 0.74713 1.05550 1.02401 1.86561 1.25006 1.32223 1.84519 1.20313 0.88035 0.81169 0.71490 1.90742 1.67189 1.36709 1.49320 1.19735 0.88614 0.94695 1.24219 1.22591 0.82713 0.99644 0.99373 1.43280 1.05772 1.06533 1.52723 1.21869 0.86850 0.99507 0.94472 1.20989 0.83201 0.83552 0.91933 1.90599 1.56221 1.56882 1.47658 1.41813 1.23129 1.46095 1.08426 1.19577 1.09442 1.32737 0.84920 0.90524 1.25953 0.95465 0.95711 1.03355 1.69626 1.17244 1.35515 1.32807 0.85056 0.77872 0.78451 0.77422 1.19862 1.19334 1.19864 1.21855 0.98739 0.83026 1.10327 1.20704 0.91317 0.94894 1.06525 1.20143 1.00902 0.89750 1.02319 0.92425 0.85015 0.91706 0.78962 0.83569 0.83571 0.76332 0.91029 0.79582 0.90806 0.90632 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.82 16 2 O -0.37 -10.35 10.42 -57.00 -0.59 -10.94 16 3 C 0.54 18.10 7.95 70.15 0.56 18.66 16 4 O -0.55 -20.05 15.12 19.66 0.30 -19.75 16 5 C -0.26 -8.86 6.32 -18.82 -0.12 -8.98 16 6 C 0.10 2.93 11.22 84.17 0.94 3.87 16 7 N -0.41 -12.46 2.17 -527.64 -1.15 -13.60 16 8 C 0.10 2.68 6.48 85.63 0.56 3.24 16 9 C 0.42 17.64 7.85 87.65 0.69 18.33 16 10 O -0.63 -33.02 16.01 -3.06 -0.05 -33.06 16 11 N -0.56 -25.70 5.29 -306.97 -1.62 -27.32 16 12 C -0.34 -17.98 9.68 84.04 0.81 -17.17 16 13 H 0.08 4.44 7.16 -2.91 -0.02 4.42 16 14 C 0.00 -0.18 5.50 84.93 0.47 0.28 16 15 N -0.91 -45.89 13.05 21.66 0.28 -45.61 16 16 Si 0.99 40.90 29.55 68.60 2.03 42.93 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 C -0.01 -0.41 11.25 83.11 0.93 0.53 16 21 C -0.13 -4.13 6.35 -18.51 -0.12 -4.25 16 22 C -0.07 -2.02 9.98 71.24 0.71 -1.31 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.19 4.94 8.06 -2.91 -0.02 4.91 16 27 H 0.15 3.01 8.13 -2.39 -0.02 2.99 16 28 H 0.15 3.03 8.13 -2.39 -0.02 3.01 16 29 H 0.40 16.99 7.90 -92.70 -0.73 16.26 16 30 H 0.28 13.28 8.31 -92.72 -0.77 12.51 16 31 H 0.19 4.55 8.06 -2.91 -0.02 4.52 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 Total: -1.00 -71.69 309.36 6.23 -65.46 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.40 Total: 26.88 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 6.63 Total: 15.01 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.49 Total: -86.53 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -0.35 Total: -63.76 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -71.69 6.23 -65.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724640986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.947 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds