Wall clock time and date at job start Mon Mar 30 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30503 * 125.64845 * 2 1 4 4 C 1.34130 * 109.25238 * 179.73159 * 3 2 1 5 5 C 1.50699 * 125.98632 * 180.24513 * 4 3 2 6 6 C 1.34663 * 108.02246 * 0.39950 * 4 3 2 7 7 C 1.50700 * 126.59306 * 179.86969 * 6 4 3 8 8 N 1.46498 * 109.46769 * 79.71137 * 7 6 4 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21443 * 120.00325 * 0.28121 * 9 8 7 11 11 C 1.48827 * 120.00046 * 180.27751 * 9 8 7 12 12 O 1.21503 * 120.00063 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00046 * 179.97438 * 11 9 8 14 14 C 1.36121 * 119.99923 * 179.97438 * 13 11 9 15 15 H 1.08002 * 120.00360 * 0.02562 * 14 13 11 16 16 C 1.39592 * 120.00132 * 180.02562 * 14 13 11 17 17 N 1.31014 * 119.99647 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00299 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46925 * 89.99692 * 18 16 14 20 20 H 1.48495 * 109.47590 * 210.00151 * 18 16 14 21 21 H 1.48498 * 109.47401 * 330.00205 * 18 16 14 22 22 N 1.35037 * 125.64850 * 179.97438 * 2 1 3 23 23 H 0.97001 * 126.39920 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47209 * 270.02610 * 1 2 3 25 25 H 1.09001 * 109.47296 * 30.02483 * 1 2 3 26 26 H 1.08998 * 109.47165 * 150.02521 * 1 2 3 27 27 H 1.08991 * 109.47370 * 270.18024 * 5 4 3 28 28 H 1.08999 * 109.47199 * 30.18413 * 5 4 3 29 29 H 1.08998 * 109.46600 * 150.17941 * 5 4 3 30 30 H 1.09004 * 109.47210 * 319.71495 * 7 6 4 31 31 H 1.08994 * 109.47121 * 199.71464 * 7 6 4 32 32 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 33 33 H 0.97000 * 120.00317 * 0.02562 * 13 11 9 34 34 H 0.96996 * 120.00096 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 0.0059 5 6 4.7480 1.6017 0.0132 6 6 3.5926 -0.6642 0.0008 7 6 4.8276 -1.5278 0.0018 8 7 5.3643 -1.6108 1.3624 9 6 6.4714 -2.3396 1.6068 10 8 7.0269 -2.9234 0.6983 11 6 7.0131 -2.4289 2.9901 12 8 6.4571 -1.8452 3.8992 13 7 8.1199 -3.1581 3.2346 14 6 8.6157 -3.2394 4.4997 15 1 8.1220 -2.7198 5.3076 16 6 9.7623 -3.9942 4.7529 17 7 10.3609 -4.6248 3.7729 18 14 10.4431 -4.1051 6.4887 19 1 9.8283 -5.2618 7.1885 20 1 11.9158 -4.2864 6.4323 21 1 10.1261 -2.8554 7.2256 22 7 2.2940 -1.0973 0.0005 23 1 1.9951 -2.0201 0.0006 24 1 -0.3633 0.0005 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 5.0390 1.8275 -1.0126 28 1 4.4910 2.5264 0.5299 29 1 5.5774 1.1165 0.5277 30 1 5.5770 -1.0910 -0.6584 31 1 4.5722 -2.5275 -0.3497 32 1 4.9205 -1.1448 2.0881 33 1 8.5636 -3.6245 2.5089 34 1 11.1575 -5.1497 3.9488 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724678488.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:12 Heat of formation + Delta-G solvation = -52.092737 kcal Electronic energy + Delta-G solvation = -19342.345473 eV Core-core repulsion = 16081.728107 eV Total energy + Delta-G solvation = -3260.617366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.24777 -41.25570 -39.16082 -36.66577 -35.92234 -34.30476 -33.50795 -32.98896 -30.17902 -29.24194 -27.67857 -25.44475 -23.96042 -22.02066 -21.29287 -20.88203 -20.37166 -19.06233 -18.01681 -17.72539 -16.91587 -16.72450 -16.41655 -15.94855 -15.73617 -15.36358 -14.78962 -14.63471 -14.28970 -14.04139 -13.72767 -13.68026 -13.66735 -13.31294 -13.20303 -12.96998 -12.89393 -12.58522 -12.34345 -12.10545 -11.66920 -11.08678 -10.91250 -10.31772 -10.31278 -10.26673 -9.24533 -8.66417 -6.11188 0.58048 0.72227 1.41927 1.47040 1.56364 1.79625 2.01625 2.13345 2.33450 2.36258 3.14956 3.28399 3.39150 3.68999 3.93485 4.02504 4.21886 4.23864 4.50224 4.61635 4.74835 4.81242 4.95485 5.10283 5.11997 5.13497 5.18480 5.25150 5.67021 5.69255 6.11467 6.34934 6.44936 6.77867 6.97694 7.02204 7.27417 7.79796 8.49222 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.003546 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.261894 B = 7894.735909 C = 8007.437352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.222 3.778 3 N -0.527 5.527 4 C 0.016 3.984 5 C -0.072 4.072 6 C -0.056 4.056 7 C 0.204 3.796 8 N -0.691 5.691 9 C 0.524 3.476 10 O -0.561 6.561 11 C 0.389 3.611 12 O -0.618 6.618 13 N -0.509 5.509 14 C -0.346 4.346 15 H 0.098 0.902 16 C -0.003 4.003 17 N -0.894 5.894 18 Si 1.009 2.991 19 H -0.265 1.265 20 H -0.267 1.267 21 H -0.264 1.264 22 N -0.549 5.549 23 H 0.434 0.566 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.401 0.599 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 5.195 -8.333 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.042 4.042 3 N -0.249 5.249 4 C -0.115 4.115 5 C -0.130 4.130 6 C -0.171 4.171 7 C 0.081 3.919 8 N -0.344 5.344 9 C 0.307 3.693 10 O -0.440 6.440 11 C 0.174 3.826 12 O -0.508 6.508 13 N -0.143 5.143 14 C -0.475 4.475 15 H 0.116 0.884 16 C -0.208 4.208 17 N -0.532 5.532 18 Si 0.830 3.170 19 H -0.190 1.190 20 H -0.191 1.191 21 H -0.189 1.189 22 N -0.154 5.154 23 H 0.274 0.726 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.236 0.764 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.338 5.855 -8.468 18.472 hybrid contribution 0.667 -1.396 0.569 1.649 sum -14.670 4.459 -7.899 17.248 Atomic orbital electron populations 1.20409 0.81567 1.05628 1.04909 1.24076 0.97143 0.81029 1.01989 1.70199 1.01944 1.30152 1.22577 1.20923 0.93689 0.91763 1.05079 1.20133 0.92159 0.97643 1.03094 1.20645 0.85821 0.94698 1.15923 1.19552 0.90416 0.98870 0.83103 1.45730 1.27002 1.50136 1.11544 1.19992 0.81317 0.79227 0.88739 1.90695 1.60053 1.46600 1.46618 1.19601 0.85673 0.87993 0.89380 1.90561 1.62081 1.51619 1.46554 1.41640 1.22050 1.39831 1.10752 1.19975 1.10169 1.31050 0.86348 0.88401 1.26521 0.95564 0.94110 1.04598 1.69542 1.20032 1.29003 1.34625 0.84707 0.77580 0.79367 0.75359 1.18952 1.19096 1.18854 1.43043 1.05204 1.10934 1.56255 0.72557 0.88849 0.88693 0.87998 0.89953 0.90975 0.91462 0.88575 0.89636 0.75053 0.76381 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.22 4.41 8.15 138.13 1.13 5.54 16 3 N -0.53 -14.02 11.25 -176.29 -1.98 -16.00 16 4 C 0.02 0.42 7.09 41.39 0.29 0.71 16 5 C -0.07 -1.71 10.22 71.24 0.73 -0.98 16 6 C -0.06 -1.32 6.61 40.95 0.27 -1.05 16 7 C 0.20 5.22 5.75 85.63 0.49 5.71 16 8 N -0.69 -22.68 5.54 -468.75 -2.60 -25.27 16 9 C 0.52 22.11 7.87 87.08 0.69 22.80 16 10 O -0.56 -25.23 16.47 -3.54 -0.06 -25.29 16 11 C 0.39 19.68 7.82 87.08 0.68 20.36 16 12 O -0.62 -33.58 16.03 -3.73 -0.06 -33.64 16 13 N -0.51 -27.60 5.25 -308.87 -1.62 -29.22 16 14 C -0.35 -19.32 9.68 84.35 0.82 -18.50 16 15 H 0.10 5.64 7.15 -2.91 -0.02 5.62 16 16 C 0.00 -0.18 5.51 85.14 0.47 0.29 16 17 N -0.89 -47.56 13.03 21.77 0.28 -47.28 16 18 Si 1.01 40.44 29.56 68.60 2.03 42.47 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 N -0.55 -10.14 6.15 -174.60 -1.07 -11.21 16 23 H 0.43 5.23 8.96 -92.71 -0.83 4.40 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.65 7.89 -2.39 -0.02 1.63 16 30 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 13.69 7.92 -92.71 -0.73 12.96 16 33 H 0.40 21.91 7.35 -92.71 -0.68 21.23 16 34 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -70.26 308.36 0.16 -70.10 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -1.07 Total: 40.37 kcal Atomic # 6 Polarization: 28.64 SS G_CDS: 6.31 Total: 34.95 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -6.99 Total: -128.97 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.12 Total: -58.92 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -70.26 0.16 -70.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724678488.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.012 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds