Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34440 * 125.45627 * 2 1 4 4 C 1.46741 * 106.37782 * 179.97438 * 3 2 1 5 5 C 1.47103 * 127.02652 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.34788 * 120.00130 * 0.02901 * 5 4 3 8 8 C 1.45200 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46831 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.37100 * 120.00078 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99638 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99969 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99992 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99665 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46903 * 59.99907 * 16 14 12 18 18 H 1.48501 * 109.46582 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47099 * 299.99592 * 16 14 12 20 20 C 1.37848 * 105.94799 * 0.02562 * 4 3 2 21 21 C 1.50703 * 125.89415 * 179.97438 * 20 4 3 22 22 N 1.34626 * 108.20636 * 0.26227 * 20 4 3 23 23 H 0.97000 * 124.80625 * 179.71920 * 22 20 4 24 24 H 1.09002 * 109.47090 * 90.02505 * 1 2 3 25 25 H 1.09002 * 109.46952 * 210.02096 * 1 2 3 26 26 H 1.09001 * 109.47321 * 330.02512 * 1 2 3 27 27 H 1.08000 * 126.81182 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.46919 * 299.99507 * 8 7 5 29 29 H 1.08995 * 109.47494 * 59.99901 * 8 7 5 30 30 H 0.96997 * 119.99953 * 0.02562 * 11 9 8 31 31 H 0.96997 * 119.99773 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47152 * 89.99938 * 21 20 4 33 33 H 1.09001 * 109.46980 * 330.00038 * 21 20 4 34 34 H 1.09004 * 109.47113 * 210.00019 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6154 0.0006 5 6 4.8947 1.4358 0.0003 6 8 5.9862 0.9009 0.0005 7 8 4.8031 2.7806 0.0000 8 6 6.0491 3.5261 -0.0009 9 6 5.7506 5.0033 -0.0018 10 8 4.6009 5.3897 -0.0012 11 7 6.7612 5.8950 -0.0021 12 6 6.4897 7.2388 -0.0024 13 1 5.4659 7.5828 -0.0028 14 6 7.5316 8.1581 -0.0034 15 7 8.7772 7.7394 -0.0034 16 14 7.1615 9.9891 -0.0045 17 1 6.3776 10.3364 1.2080 18 1 8.4358 10.7516 -0.0047 19 1 6.3771 10.3348 -1.2170 20 6 3.5984 -0.7610 0.0004 21 6 4.7691 -1.7099 0.0003 22 7 2.2984 -1.1111 -0.0062 23 1 1.9710 -2.0242 -0.0117 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.9579 2.1238 -0.0004 28 1 6.6251 3.2720 0.8889 29 1 6.6243 3.2715 -0.8910 30 1 7.6806 5.5860 -0.0022 31 1 9.5045 8.3812 -0.0044 32 1 5.0513 -1.9388 1.0279 33 1 5.6118 -1.2471 -0.5134 34 1 4.4910 -2.6300 -0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -87.810093 kcal Electronic energy + Delta-G solvation = -19195.557195 eV Core-core repulsion = 15901.098257 eV Total energy + Delta-G solvation = -3294.458938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40358 -39.62780 -37.95173 -35.79326 -33.90893 -32.78912 -31.40193 -31.23180 -29.38048 -28.24894 -25.30523 -24.41402 -22.64740 -20.52977 -19.48717 -19.39672 -17.97293 -17.33626 -16.27306 -16.08400 -15.98490 -15.13746 -15.06750 -14.39795 -13.91295 -13.80314 -13.77308 -13.44066 -13.39208 -12.85682 -12.65949 -12.40121 -12.30012 -12.10771 -11.92865 -11.55479 -11.50833 -11.05460 -10.43753 -10.24600 -10.19553 -10.12774 -9.52053 -8.94555 -8.41386 -8.13974 -8.00317 -6.42826 -3.84533 1.53298 2.26784 2.75090 3.20775 3.20970 3.27182 3.34098 3.45132 3.84202 4.19384 4.61857 4.68767 4.90783 4.94631 5.07459 5.22955 5.31707 5.33049 5.39811 5.49090 5.64368 5.69734 5.82785 5.84406 5.86596 6.11392 6.21425 6.67441 6.79664 6.91840 7.26388 7.54352 7.99897 8.22764 8.57774 9.14682 9.48080 9.98859 10.74617 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.003549 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.945883 B = 7888.530198 C = 8636.725912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.003 4.003 3 C -0.133 4.133 4 C -0.218 4.218 5 C 0.537 3.463 6 O -0.529 6.529 7 O -0.320 6.320 8 C 0.062 3.938 9 C 0.441 3.559 10 O -0.575 6.575 11 N -0.555 5.555 12 C -0.302 4.302 13 H 0.105 0.895 14 C 0.024 3.976 15 N -0.899 5.899 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.111 3.889 21 C -0.096 4.096 22 N -0.545 5.545 23 H 0.415 0.585 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.395 0.605 31 H 0.273 0.727 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -19.023 -0.016 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.156 4.156 4 C -0.226 4.226 5 C 0.384 3.616 6 O -0.421 6.421 7 O -0.234 6.234 8 C -0.016 4.016 9 C 0.226 3.774 10 O -0.459 6.459 11 N -0.193 5.193 12 C -0.431 4.431 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.540 5.540 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.007 4.007 21 C -0.153 4.153 22 N -0.142 5.142 23 H 0.251 0.749 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.173 0.827 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.861 -18.849 -0.019 21.754 hybrid contribution 0.534 0.323 0.008 0.624 sum -10.327 -18.526 -0.011 21.210 Atomic orbital electron populations 1.20317 0.87558 1.03357 1.02741 1.20235 0.93635 0.85735 1.11524 1.22027 0.90269 0.98459 1.04835 1.19389 0.91784 0.90874 1.20562 1.20144 0.88039 0.81188 0.72258 1.90768 1.29233 1.73737 1.48365 1.86625 1.35364 1.18057 1.83399 1.22686 0.84088 0.91443 1.03343 1.19373 0.86582 0.85893 0.85586 1.90554 1.20421 1.79901 1.55020 1.41692 1.07521 1.05883 1.64161 1.19679 0.95093 0.80196 1.48102 0.87711 1.25293 0.94603 1.00854 0.97039 1.69609 0.98517 1.35923 1.49935 0.85867 0.77482 0.81425 0.79155 1.19794 1.20929 1.19792 1.20506 0.85076 0.93681 1.01462 1.20605 0.94590 0.96423 1.03673 1.41449 1.05144 1.08880 1.58726 0.74851 0.91007 0.91918 0.89757 0.82687 0.89675 0.89687 0.77172 0.91662 0.90164 0.87965 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.41 36.00 0.37 -0.19 16 2 C 0.00 -0.04 7.11 -81.89 -0.58 -0.62 16 3 C -0.13 -1.86 10.89 -37.49 -0.41 -2.27 16 4 C -0.22 -3.38 6.33 -103.01 -0.65 -4.03 16 5 C 0.54 9.90 7.95 34.33 0.27 10.17 16 6 O -0.53 -9.99 14.67 -19.30 -0.28 -10.27 16 7 O -0.32 -6.67 9.66 -47.41 -0.46 -7.13 16 8 C 0.06 1.28 5.96 36.01 0.21 1.49 16 9 C 0.44 11.12 7.86 -10.98 -0.09 11.03 16 10 O -0.58 -16.58 16.08 -14.11 -0.23 -16.81 16 11 N -0.55 -14.50 5.29 -10.96 -0.06 -14.56 16 12 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 13 H 0.11 3.08 7.16 -52.48 -0.38 2.70 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.11 1.32 7.22 -81.51 -0.59 0.73 16 21 C -0.10 -0.91 9.90 36.01 0.36 -0.55 16 22 N -0.55 -4.96 5.89 -5.20 -0.03 -4.99 16 23 H 0.41 2.18 8.96 -40.82 -0.37 1.81 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.19 6.51 -51.93 -0.34 0.85 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -34.54 308.19 -5.97 -40.51 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.92 Total: 8.76 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.34 Total: 7.65 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.64 Total: -43.44 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.97 Total: -34.21 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.54 -5.97 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.298 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds