Wall clock time and date at job start Mon Mar 30 2020 04:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34440 * 125.45627 * 2 1 4 4 C 1.46741 * 106.37782 * 179.97438 * 3 2 1 5 5 C 1.47103 * 127.02652 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.34788 * 120.00130 * 0.02901 * 5 4 3 8 8 C 1.45200 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46831 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.37100 * 120.00078 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99638 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99969 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99992 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99665 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46903 * 59.99907 * 16 14 12 18 18 H 1.48501 * 109.46582 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47099 * 299.99592 * 16 14 12 20 20 C 1.37848 * 105.94799 * 0.02562 * 4 3 2 21 21 C 1.50703 * 125.89415 * 179.97438 * 20 4 3 22 22 N 1.34626 * 108.20636 * 0.26227 * 20 4 3 23 23 H 0.97000 * 124.80625 * 179.71920 * 22 20 4 24 24 H 1.09002 * 109.47090 * 90.02505 * 1 2 3 25 25 H 1.09002 * 109.46952 * 210.02096 * 1 2 3 26 26 H 1.09001 * 109.47321 * 330.02512 * 1 2 3 27 27 H 1.08000 * 126.81182 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.46919 * 299.99507 * 8 7 5 29 29 H 1.08995 * 109.47494 * 59.99901 * 8 7 5 30 30 H 0.96997 * 119.99953 * 0.02562 * 11 9 8 31 31 H 0.96997 * 119.99773 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47152 * 89.99938 * 21 20 4 33 33 H 1.09001 * 109.46980 * 330.00038 * 21 20 4 34 34 H 1.09004 * 109.47113 * 210.00019 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6154 0.0006 5 6 4.8947 1.4358 0.0003 6 8 5.9862 0.9009 0.0005 7 8 4.8031 2.7806 0.0000 8 6 6.0491 3.5261 -0.0009 9 6 5.7506 5.0033 -0.0018 10 8 4.6009 5.3897 -0.0012 11 7 6.7612 5.8950 -0.0021 12 6 6.4897 7.2388 -0.0024 13 1 5.4659 7.5828 -0.0028 14 6 7.5316 8.1581 -0.0034 15 7 8.7772 7.7394 -0.0034 16 14 7.1615 9.9891 -0.0045 17 1 6.3776 10.3364 1.2080 18 1 8.4358 10.7516 -0.0047 19 1 6.3771 10.3348 -1.2170 20 6 3.5984 -0.7610 0.0004 21 6 4.7691 -1.7099 0.0003 22 7 2.2984 -1.1111 -0.0062 23 1 1.9710 -2.0242 -0.0117 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.9579 2.1238 -0.0004 28 1 6.6251 3.2720 0.8889 29 1 6.6243 3.2715 -0.8910 30 1 7.6806 5.5860 -0.0022 31 1 9.5045 8.3812 -0.0044 32 1 5.0513 -1.9388 1.0279 33 1 5.6118 -1.2471 -0.5134 34 1 4.4910 -2.6300 -0.5138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:20 Heat of formation + Delta-G solvation = -111.443235 kcal Electronic energy + Delta-G solvation = -19196.582005 eV Core-core repulsion = 15901.098257 eV Total energy + Delta-G solvation = -3295.483748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37002 -41.12701 -39.91172 -37.33632 -36.02461 -33.59644 -33.42069 -32.36470 -30.17458 -29.86750 -26.84229 -25.89699 -23.80891 -21.52177 -21.36787 -20.69991 -20.06132 -18.57173 -17.79011 -17.61656 -17.37028 -16.82431 -16.22041 -16.07438 -15.74329 -15.43769 -14.70058 -14.60501 -14.24678 -14.07788 -13.81953 -13.59874 -13.56194 -13.47868 -13.07856 -12.93594 -12.92067 -12.48655 -12.44745 -12.11826 -11.79550 -11.56820 -11.51599 -10.50831 -10.11886 -9.95950 -9.05487 -8.51793 -6.02827 0.38762 1.31863 1.38199 1.39592 1.47552 1.58034 1.87023 2.19471 2.20739 2.33845 3.12215 3.13423 3.76946 3.83840 4.01194 4.12909 4.17615 4.21046 4.23701 4.48493 4.58230 4.70762 4.82902 4.89187 5.05736 5.16056 5.17552 5.36556 5.46511 5.68607 5.89117 5.90057 6.47045 6.56054 6.81965 7.02905 7.39698 7.93744 8.65247 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.003549 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.945883 B = 7888.530198 C = 8636.725912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.022 3.978 3 C -0.176 4.176 4 C -0.268 4.268 5 C 0.532 3.468 6 O -0.542 6.542 7 O -0.344 6.344 8 C 0.073 3.927 9 C 0.437 3.563 10 O -0.618 6.618 11 N -0.557 5.557 12 C -0.341 4.341 13 H 0.084 0.916 14 C -0.009 4.009 15 N -0.916 5.916 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.269 1.269 20 C 0.130 3.870 21 C -0.094 4.094 22 N -0.523 5.523 23 H 0.438 0.562 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.400 0.600 31 H 0.281 0.719 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -20.774 -0.001 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.199 4.199 4 C -0.276 4.276 5 C 0.381 3.619 6 O -0.435 6.435 7 O -0.259 6.259 8 C -0.004 4.004 9 C 0.223 3.777 10 O -0.505 6.505 11 N -0.194 5.194 12 C -0.470 4.470 13 H 0.102 0.898 14 C -0.209 4.209 15 N -0.556 5.556 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.192 1.192 19 H -0.194 1.194 20 C 0.010 3.990 21 C -0.151 4.151 22 N -0.122 5.122 23 H 0.280 0.720 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.154 0.846 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.579 -20.651 -0.004 23.676 hybrid contribution 0.724 0.761 0.002 1.051 sum -10.855 -19.890 -0.003 22.659 Atomic orbital electron populations 1.20465 0.84561 1.04794 1.04061 1.20640 0.95165 0.84896 1.08026 1.22012 0.90629 0.99005 1.08250 1.19526 0.91196 0.92408 1.24453 1.20673 0.89190 0.80245 0.71826 1.90737 1.29820 1.73458 1.49443 1.86625 1.35397 1.19747 1.84133 1.22474 0.84558 0.88291 1.05108 1.20100 0.85715 0.87744 0.84093 1.90514 1.22081 1.81144 1.56742 1.41719 1.07962 1.05672 1.64067 1.19714 0.94783 0.81610 1.50877 0.89795 1.26153 0.94149 1.05072 0.95551 1.69671 0.99163 1.37661 1.49073 0.84895 0.77921 0.75784 0.79169 1.19449 1.19234 1.19441 1.20774 0.86735 0.92630 0.98898 1.20673 0.92784 0.97107 1.04573 1.41440 1.03997 1.09902 1.56831 0.72007 0.89620 0.89049 0.89785 0.84581 0.87777 0.87786 0.76550 0.90908 0.89049 0.90252 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.41 71.23 0.74 -0.14 16 2 C 0.02 0.41 7.11 40.97 0.29 0.71 16 3 C -0.18 -5.05 10.89 23.62 0.26 -4.80 16 4 C -0.27 -8.44 6.33 -18.82 -0.12 -8.56 16 5 C 0.53 20.27 7.95 70.15 0.56 20.83 16 6 O -0.54 -20.79 14.67 19.68 0.29 -20.51 16 7 O -0.34 -14.98 9.66 -50.60 -0.49 -15.47 16 8 C 0.07 3.08 5.96 71.24 0.42 3.51 16 9 C 0.44 22.88 7.86 87.66 0.69 23.57 16 10 O -0.62 -37.36 16.08 15.72 0.25 -37.11 16 11 N -0.56 -29.97 5.29 -306.98 -1.62 -31.60 16 12 C -0.34 -19.81 9.68 84.04 0.81 -18.99 16 13 H 0.08 5.15 7.16 -2.91 -0.02 5.12 16 14 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 15 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 16 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 C 0.13 2.88 7.22 42.04 0.30 3.18 16 21 C -0.09 -1.57 9.90 71.24 0.71 -0.86 16 22 N -0.52 -7.95 5.89 -170.37 -1.00 -8.95 16 23 H 0.44 2.65 8.96 -92.71 -0.83 1.81 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 29 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.40 20.26 7.90 -92.71 -0.73 19.53 16 31 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.76 6.51 -2.39 -0.02 1.75 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -77.39 308.19 4.46 -72.93 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.41 Total: 26.78 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 5.13 Total: 18.45 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.34 Total: -90.09 kcal Atomic # 8 Polarization: -73.14 SS G_CDS: 0.05 Total: -73.09 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.39 4.46 -72.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.509 kcal (2) G-P(sol) polarization free energy of solvation -77.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds