Wall clock time and date at job start Mon Mar 30 2020 04:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47230 * 2 1 4 4 C 1.36508 * 126.49892 * 270.00237 * 3 2 1 5 5 C 1.46570 * 125.86487 * 359.97438 * 4 3 2 6 6 O 1.21643 * 119.99826 * 359.97438 * 5 4 3 7 7 O 1.34880 * 119.99992 * 180.02562 * 5 4 3 8 8 C 1.34855 * 116.99830 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00046 * 0.02562 * 8 7 5 10 10 C 1.38786 * 119.99885 * 179.97438 * 8 7 5 11 11 N 1.31437 * 120.00021 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00242 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47181 * 89.99900 * 12 10 8 14 14 H 1.48501 * 109.47101 * 210.00252 * 12 10 8 15 15 H 1.48501 * 109.46743 * 330.00289 * 12 10 8 16 16 N 1.37826 * 108.27057 * 179.74099 * 4 3 2 17 17 H 0.97002 * 125.40005 * 180.27913 * 16 4 3 18 18 C 1.34267 * 109.20835 * 0.43269 * 16 4 3 19 19 C 1.50703 * 125.79206 * 179.83490 * 18 16 4 20 20 C 1.38254 * 108.41781 * 359.56736 * 18 16 4 21 21 C 1.47401 * 126.45318 * 180.24358 * 20 18 16 22 22 N 1.34778 * 119.99910 * 270.03108 * 21 20 18 23 23 O 1.21613 * 120.00112 * 90.02550 * 21 20 18 24 24 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47200 * 299.99650 * 1 2 3 26 26 H 1.09009 * 109.47280 * 59.99772 * 1 2 3 27 27 H 1.09005 * 109.47145 * 240.00651 * 2 1 3 28 28 H 1.09001 * 109.47523 * 120.00475 * 2 1 3 29 29 H 0.96998 * 120.00311 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47152 * 269.68913 * 19 18 16 31 31 H 1.09001 * 109.46980 * 149.69013 * 19 18 16 32 32 H 1.09004 * 109.47113 * 29.68994 * 19 18 16 33 33 H 0.96998 * 120.00152 * 359.97438 * 22 21 20 34 34 H 0.97005 * 119.99568 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3029 2.1864 -1.0973 5 6 2.1554 1.7676 -2.4941 6 8 1.7602 0.6470 -2.7546 7 8 2.4587 2.6243 -3.4907 8 6 2.3012 2.1759 -4.7528 9 1 1.9460 1.1712 -4.9284 10 6 2.5946 3.0058 -5.8258 11 7 3.0264 4.2286 -5.6119 12 14 2.3757 2.3849 -7.5739 13 1 0.9976 2.6867 -8.0375 14 1 3.3558 3.0572 -8.4643 15 1 2.5997 0.9174 -7.6096 16 7 2.7338 3.4226 -0.6662 17 1 2.9892 4.1606 -1.2415 18 6 2.7470 3.4423 0.6762 19 6 3.1595 4.6088 1.5365 20 6 2.3123 2.2128 1.1355 21 6 2.1687 1.8051 2.5447 22 7 3.2036 1.2300 3.1886 23 8 1.1164 1.9877 3.1263 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.2311 4.8088 -6.3618 30 1 4.2278 4.5475 1.7439 31 1 2.6051 4.5823 2.4747 32 1 2.9438 5.5404 1.0132 33 1 4.0428 1.0841 2.7247 34 1 3.1089 0.9614 4.1159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748363991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:54 Heat of formation + Delta-G solvation = -94.506609 kcal Electronic energy + Delta-G solvation = -20153.038770 eV Core-core repulsion = 16858.289449 eV Total energy + Delta-G solvation = -3294.749321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34018 -38.94823 -38.44528 -35.39899 -33.77051 -33.44680 -32.25922 -31.35598 -29.68870 -27.08760 -25.39424 -23.56614 -22.93388 -21.02042 -19.48393 -18.69224 -18.03964 -17.64498 -17.02342 -16.08706 -15.56026 -15.00981 -14.73797 -14.40995 -14.05702 -13.98454 -13.69122 -13.61925 -13.29178 -12.69968 -12.57009 -12.45226 -12.05172 -11.74013 -11.63012 -11.28336 -10.85731 -10.60032 -10.50522 -10.40649 -10.04263 -9.96061 -9.63281 -9.12743 -8.68130 -8.56779 -7.81531 -6.53167 -4.17073 1.87381 2.53651 2.72752 3.11529 3.13955 3.19981 3.32730 3.75763 3.92620 4.00468 4.54390 4.83251 5.06621 5.12028 5.21791 5.43897 5.46485 5.52716 5.81075 5.87294 5.93150 6.05911 6.18301 6.36716 6.60058 6.71685 6.71921 6.80253 6.93921 7.20764 7.33003 7.41079 7.66635 7.84179 8.38087 8.59449 8.96660 9.71549 10.64966 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.005158 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.756435 B = 5427.381374 C = 6131.084499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.052 4.052 4 C 0.006 3.994 5 C 0.463 3.537 6 O -0.534 6.534 7 O -0.217 6.217 8 C -0.375 4.375 9 H 0.099 0.901 10 C 0.042 3.958 11 N -0.866 5.866 12 Si 0.945 3.055 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.265 1.265 16 N -0.511 5.511 17 H 0.429 0.571 18 C 0.081 3.919 19 C -0.091 4.091 20 C -0.236 4.236 21 C 0.608 3.392 22 N -0.851 5.851 23 O -0.543 6.543 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.271 0.729 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -1.226 13.158 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.059 4.059 4 C -0.105 4.105 5 C 0.311 3.689 6 O -0.430 6.430 7 O -0.124 6.124 8 C -0.451 4.451 9 H 0.117 0.883 10 C -0.163 4.163 11 N -0.503 5.503 12 Si 0.770 3.230 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.190 1.190 16 N -0.105 5.105 17 H 0.269 0.731 18 C -0.041 4.041 19 C -0.149 4.149 20 C -0.246 4.246 21 C 0.393 3.607 22 N -0.414 5.414 23 O -0.419 6.419 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.726 -1.021 12.986 13.309 hybrid contribution 0.470 0.044 -1.025 1.128 sum 3.196 -0.977 11.962 12.420 Atomic orbital electron populations 1.21620 0.94883 1.01057 1.02015 1.20087 0.96179 0.90774 1.02642 1.19371 1.01363 0.96273 0.88921 1.19211 1.12889 0.86450 0.91977 1.19528 0.80398 0.84569 0.84429 1.90676 1.47621 1.21144 1.83581 1.83902 1.71529 1.41516 1.15492 1.21268 1.45400 1.00694 0.77726 0.88334 1.25358 0.95969 0.95085 0.99847 1.69960 1.41332 1.06419 1.32549 0.85633 0.78447 0.79169 0.79764 1.19793 1.20300 1.18951 1.41707 1.49308 1.13478 1.06036 0.73114 1.20470 1.03823 0.96462 0.83356 1.20450 1.02035 0.93863 0.98538 1.18939 1.17527 0.95711 0.92445 1.17460 0.82792 0.75357 0.85120 1.43895 1.16313 1.64833 1.16371 1.90801 1.27832 1.54958 1.68339 0.92955 0.93014 0.92279 0.88941 0.92349 0.91956 0.90324 0.89950 0.90765 0.76867 0.77168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.15 0.37 -1.98 16 2 C -0.06 -1.02 5.69 -27.88 -0.16 -1.18 16 3 C -0.05 -0.96 5.47 -104.10 -0.57 -1.53 16 4 C 0.01 0.12 7.02 -82.44 -0.58 -0.46 16 5 C 0.46 11.53 7.87 34.09 0.27 11.79 16 6 O -0.53 -14.03 13.95 -19.38 -0.27 -14.30 16 7 O -0.22 -6.01 9.75 -22.05 -0.21 -6.23 16 8 C -0.37 -10.77 9.65 30.94 0.30 -10.47 16 9 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 10 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 11 N -0.87 -24.39 13.67 55.49 0.76 -23.63 16 12 Si 0.95 20.76 29.55 -169.99 -5.02 15.74 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 N -0.51 -8.64 6.01 -5.62 -0.03 -8.67 16 17 H 0.43 6.82 8.96 -40.82 -0.37 6.46 16 18 C 0.08 1.19 7.20 -81.52 -0.59 0.60 16 19 C -0.09 -0.94 10.24 36.01 0.37 -0.57 16 20 C -0.24 -3.79 5.89 -105.02 -0.62 -4.41 16 21 C 0.61 8.93 7.26 -12.53 -0.09 8.84 16 22 N -0.85 -8.27 8.87 30.43 0.27 -8.00 16 23 O -0.54 -9.93 17.94 5.27 0.09 -9.83 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 27 H 0.09 1.76 6.41 -51.93 -0.33 1.43 16 28 H 0.06 0.87 8.05 -51.93 -0.42 0.46 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.09 8.81 -40.82 -0.36 2.73 16 34 H 0.40 3.07 8.93 -40.82 -0.36 2.70 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -34.48 307.71 -5.04 -39.52 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -3.86 Total: 9.09 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.40 Total: 1.66 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.99 Total: -40.30 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.39 Total: -30.35 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.48 -5.04 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748363991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.989 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds