Wall clock time and date at job start Mon Mar 30 2020 04:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47230 * 2 1 4 4 C 1.36508 * 126.49892 * 270.00237 * 3 2 1 5 5 C 1.46570 * 125.86487 * 359.97438 * 4 3 2 6 6 O 1.21643 * 119.99826 * 359.97438 * 5 4 3 7 7 O 1.34880 * 119.99992 * 180.02562 * 5 4 3 8 8 C 1.34855 * 116.99830 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00046 * 0.02562 * 8 7 5 10 10 C 1.38786 * 119.99885 * 179.97438 * 8 7 5 11 11 N 1.31437 * 120.00021 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00242 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47181 * 89.99900 * 12 10 8 14 14 H 1.48501 * 109.47101 * 210.00252 * 12 10 8 15 15 H 1.48501 * 109.46743 * 330.00289 * 12 10 8 16 16 N 1.37826 * 108.27057 * 179.74099 * 4 3 2 17 17 H 0.97002 * 125.40005 * 180.27913 * 16 4 3 18 18 C 1.34267 * 109.20835 * 0.43269 * 16 4 3 19 19 C 1.50703 * 125.79206 * 179.83490 * 18 16 4 20 20 C 1.38254 * 108.41781 * 359.56736 * 18 16 4 21 21 C 1.47401 * 126.45318 * 180.24358 * 20 18 16 22 22 N 1.34778 * 119.99910 * 270.03108 * 21 20 18 23 23 O 1.21613 * 120.00112 * 90.02550 * 21 20 18 24 24 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47200 * 299.99650 * 1 2 3 26 26 H 1.09009 * 109.47280 * 59.99772 * 1 2 3 27 27 H 1.09005 * 109.47145 * 240.00651 * 2 1 3 28 28 H 1.09001 * 109.47523 * 120.00475 * 2 1 3 29 29 H 0.96998 * 120.00311 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47152 * 269.68913 * 19 18 16 31 31 H 1.09001 * 109.46980 * 149.69013 * 19 18 16 32 32 H 1.09004 * 109.47113 * 29.68994 * 19 18 16 33 33 H 0.96998 * 120.00152 * 359.97438 * 22 21 20 34 34 H 0.97005 * 119.99568 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3029 2.1864 -1.0973 5 6 2.1554 1.7676 -2.4941 6 8 1.7602 0.6470 -2.7546 7 8 2.4587 2.6243 -3.4907 8 6 2.3012 2.1759 -4.7528 9 1 1.9460 1.1712 -4.9284 10 6 2.5946 3.0058 -5.8258 11 7 3.0264 4.2286 -5.6119 12 14 2.3757 2.3849 -7.5739 13 1 0.9976 2.6867 -8.0375 14 1 3.3558 3.0572 -8.4643 15 1 2.5997 0.9174 -7.6096 16 7 2.7338 3.4226 -0.6662 17 1 2.9892 4.1606 -1.2415 18 6 2.7470 3.4423 0.6762 19 6 3.1595 4.6088 1.5365 20 6 2.3123 2.2128 1.1355 21 6 2.1687 1.8051 2.5447 22 7 3.2036 1.2300 3.1886 23 8 1.1164 1.9877 3.1263 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.2311 4.8088 -6.3618 30 1 4.2278 4.5475 1.7439 31 1 2.6051 4.5823 2.4747 32 1 2.9438 5.5404 1.0132 33 1 4.0428 1.0841 2.7247 34 1 3.1089 0.9614 4.1159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748363991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:53 Heat of formation + Delta-G solvation = -120.740860 kcal Electronic energy + Delta-G solvation = -20154.176373 eV Core-core repulsion = 16858.289449 eV Total energy + Delta-G solvation = -3295.886923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.73431 -40.72177 -39.81517 -37.36062 -35.21380 -34.51651 -34.32172 -32.54535 -31.01495 -28.61908 -27.19318 -25.11452 -24.22269 -22.58741 -20.76922 -20.15572 -19.90298 -19.40981 -18.02708 -17.35880 -17.27937 -16.75430 -16.36076 -16.21100 -15.53071 -15.30318 -15.05541 -14.89597 -14.62692 -14.33752 -13.71909 -13.66096 -13.62402 -13.27705 -13.08531 -12.94006 -12.43699 -12.22858 -12.19106 -12.07691 -11.95150 -11.30123 -11.02126 -10.72977 -10.61201 -9.93608 -9.22269 -8.58993 -6.35068 0.33218 1.22341 1.33461 1.40707 1.49970 1.56222 1.98075 2.09859 2.17743 2.61954 2.92742 2.98066 3.69923 3.95186 3.98001 4.26704 4.31962 4.48819 4.53268 4.64628 4.71318 4.77919 4.89155 5.03053 5.05818 5.13107 5.29615 5.32585 5.54956 5.77531 5.80230 5.95573 6.34578 6.48214 6.57477 6.87115 7.39579 7.67883 8.61616 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.005158 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.756435 B = 5427.381374 C = 6131.084499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.040 4.040 4 C -0.045 4.045 5 C 0.465 3.535 6 O -0.559 6.559 7 O -0.241 6.241 8 C -0.416 4.416 9 H 0.084 0.916 10 C -0.001 4.001 11 N -0.900 5.900 12 Si 1.017 2.983 13 H -0.262 1.262 14 H -0.259 1.259 15 H -0.263 1.263 16 N -0.509 5.509 17 H 0.432 0.568 18 C 0.115 3.885 19 C -0.092 4.092 20 C -0.252 4.252 21 C 0.613 3.387 22 N -0.822 5.822 23 O -0.582 6.582 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.280 0.720 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.416 0.584 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -0.897 14.639 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.048 4.048 4 C -0.155 4.155 5 C 0.314 3.686 6 O -0.456 6.456 7 O -0.150 6.150 8 C -0.492 4.492 9 H 0.102 0.898 10 C -0.201 4.201 11 N -0.537 5.537 12 Si 0.835 3.165 13 H -0.187 1.187 14 H -0.183 1.183 15 H -0.187 1.187 16 N -0.104 5.104 17 H 0.272 0.728 18 C -0.009 4.009 19 C -0.149 4.149 20 C -0.262 4.262 21 C 0.397 3.603 22 N -0.386 5.386 23 O -0.462 6.462 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.671 -0.708 14.495 14.970 hybrid contribution 0.230 -0.057 -1.254 1.276 sum 3.901 -0.766 13.242 13.825 Atomic orbital electron populations 1.21550 0.94624 1.02174 1.00535 1.20134 0.96354 0.90505 1.02908 1.19659 0.99354 0.96563 0.89240 1.18783 1.17801 0.88912 0.89978 1.20286 0.78533 0.84024 0.85711 1.90631 1.48450 1.22059 1.84440 1.83915 1.72891 1.42451 1.15735 1.21440 1.47913 1.00888 0.78946 0.89845 1.26488 0.94694 0.95071 1.03897 1.70031 1.41824 1.07504 1.34366 0.84632 0.79198 0.78697 0.73926 1.18663 1.18321 1.18729 1.41705 1.49174 1.12482 1.07031 0.72776 1.21304 0.99888 0.97191 0.82497 1.20698 1.04020 0.92365 0.97828 1.19140 1.18252 0.95934 0.92841 1.17204 0.83097 0.75640 0.84373 1.43612 1.15559 1.62508 1.16909 1.90796 1.29535 1.56969 1.68867 0.90631 0.92881 0.95154 0.91121 0.89469 0.91114 0.87136 0.89185 0.89141 0.75263 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.89 71.98 0.71 -3.76 16 2 C -0.06 -2.11 5.69 29.85 0.17 -1.94 16 3 C -0.04 -1.48 5.47 -19.53 -0.11 -1.59 16 4 C -0.05 -1.89 7.02 39.97 0.28 -1.61 16 5 C 0.47 24.38 7.87 69.99 0.55 24.93 16 6 O -0.56 -31.03 13.95 19.37 0.27 -30.76 16 7 O -0.24 -14.08 9.75 9.82 0.10 -13.99 16 8 C -0.42 -25.03 9.65 67.95 0.66 -24.37 16 9 H 0.08 5.10 6.86 -2.91 -0.02 5.08 16 10 C 0.00 -0.06 5.49 84.88 0.47 0.41 16 11 N -0.90 -51.61 13.67 21.63 0.30 -51.31 16 12 Si 1.02 42.83 29.55 68.60 2.03 44.86 16 13 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 15 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 16 N -0.51 -17.08 6.01 -171.71 -1.03 -18.11 16 17 H 0.43 13.79 8.96 -92.71 -0.83 12.96 16 18 C 0.12 3.13 7.20 42.19 0.30 3.43 16 19 C -0.09 -1.55 10.24 71.24 0.73 -0.82 16 20 C -0.25 -7.64 5.89 -20.12 -0.12 -7.76 16 21 C 0.61 16.38 7.26 86.66 0.63 17.01 16 22 N -0.82 -13.08 8.87 -175.90 -1.56 -14.64 16 23 O -0.58 -20.08 17.94 -4.07 -0.07 -20.15 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.07 2.76 6.41 -2.38 -0.02 2.75 16 28 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 29 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.42 4.79 8.81 -92.71 -0.82 3.97 16 34 H 0.41 4.83 8.93 -92.70 -0.83 4.01 16 Total: -1.00 -78.46 307.71 3.00 -75.46 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.30 Total: 24.71 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 4.27 Total: 3.93 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.30 Total: -84.06 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: 0.29 Total: -64.90 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.46 3.00 -75.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748363991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.281 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds