Wall clock time and date at job start Mon Mar 30 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34770 * 117.00116 * 2 1 4 4 O 1.21527 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.47301 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.36597 * 126.72517 * 0.02562 * 5 3 2 7 7 O 1.33824 * 108.50583 * 179.71665 * 6 5 3 8 8 C 1.34799 * 109.86216 * 0.44305 * 7 6 5 9 9 C 1.46782 * 125.73955 * 179.82070 * 8 7 6 10 10 N 1.29980 * 119.99840 * 359.69749 * 9 8 7 11 11 N 1.40098 * 119.99903 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00048 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46845 * 30.00557 * 12 11 10 14 14 C 1.52997 * 109.47473 * 270.00008 * 12 11 10 15 15 C 1.50706 * 109.47187 * 149.99611 * 12 11 10 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46997 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00497 * 19 17 15 23 23 C 1.35973 * 108.52482 * 359.55933 * 8 7 6 24 24 H 1.08992 * 109.47558 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47047 * 300.00831 * 1 2 3 26 26 H 1.09007 * 109.46684 * 60.00035 * 1 2 3 27 27 H 1.08002 * 125.74539 * 359.97438 * 6 5 3 28 28 H 1.08000 * 120.00168 * 179.69010 * 9 8 7 29 29 H 0.97002 * 120.00235 * 359.97438 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 34 34 H 1.07997 * 126.73067 * 180.24500 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.4078 0.2271 0.0006 7 8 5.6553 0.7114 -0.0050 8 6 5.6235 2.0590 0.0009 9 6 6.7944 2.9442 0.0012 10 7 7.9916 2.4382 0.0012 11 7 9.1092 3.2831 0.0020 12 6 10.4586 2.7129 0.0026 13 1 10.4471 1.7518 -0.5116 14 6 10.9277 2.5140 1.4452 15 6 11.4007 3.6509 -0.7073 16 1 11.0312 4.5791 -1.1174 17 6 12.7344 3.3244 -0.8321 18 7 13.1844 2.1943 -0.3323 19 14 13.9023 4.4874 -1.7113 20 1 13.1534 5.6819 -2.1778 21 1 14.9760 4.9107 -0.7769 22 1 14.5060 3.7945 -2.8778 23 6 4.3244 2.4605 0.0008 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 4.1368 -0.8183 0.0007 28 1 6.6611 4.0160 0.0012 29 1 8.9895 4.2457 0.0021 30 1 10.2463 1.8355 1.9586 31 1 10.9392 3.4751 1.9592 32 1 11.9316 2.0893 1.4456 33 1 14.1226 1.9645 -0.4205 34 1 3.9629 3.4782 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758129827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:41 Heat of formation + Delta-G solvation = -29.194674 kcal Electronic energy + Delta-G solvation = -18646.848115 eV Core-core repulsion = 15354.930932 eV Total energy + Delta-G solvation = -3291.917183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.63016 -40.26220 -36.63308 -36.57128 -34.20062 -33.26097 -31.79291 -30.00557 -28.09253 -27.03065 -25.30246 -24.01679 -22.85226 -21.09454 -20.46472 -19.97375 -17.90672 -17.26282 -16.67457 -16.65470 -16.11626 -15.94832 -15.71434 -15.14110 -14.46803 -13.69902 -13.47638 -13.34710 -12.93205 -12.86913 -12.58790 -12.55471 -12.20337 -11.60474 -11.11354 -11.04479 -10.95260 -10.79596 -10.72523 -10.34276 -10.28192 -10.04844 -9.83201 -9.14373 -8.84173 -8.55252 -6.98043 -6.20606 -4.29507 1.06158 1.51301 2.44614 2.85894 2.90612 3.19717 3.27385 3.30057 3.31909 3.60067 4.30200 4.49266 4.75453 4.84015 4.91632 4.97180 5.12361 5.22219 5.44158 5.53860 5.81959 5.90642 6.13593 6.27150 6.40756 6.74795 6.91478 7.02923 7.07036 7.48891 7.59668 7.67655 7.75045 8.02167 8.17334 8.76435 9.09023 9.37567 10.85429 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.057834 B = 0.002791 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.028118 B =10028.425544 C =10213.212267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.540 3.460 4 O -0.507 6.507 5 C -0.221 4.221 6 C 0.040 3.960 7 O -0.148 6.148 8 C 0.084 3.916 9 C -0.002 4.002 10 N -0.173 5.173 11 N -0.610 5.610 12 C 0.293 3.707 13 H 0.045 0.955 14 C -0.151 4.151 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.160 4.160 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.218 0.782 28 H 0.134 0.866 29 H 0.373 0.627 30 H 0.014 0.986 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.265 0.735 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 -3.896 1.308 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.385 3.615 4 O -0.396 6.396 5 C -0.224 4.224 6 C -0.033 4.033 7 O -0.040 6.040 8 C 0.032 3.968 9 C -0.208 4.208 10 N 0.011 4.989 11 N -0.346 5.346 12 C 0.192 3.808 13 H 0.063 0.937 14 C -0.210 4.210 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.183 4.183 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.234 0.766 28 H 0.151 0.849 29 H 0.209 0.791 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.474 -4.797 1.322 19.132 hybrid contribution -0.114 1.876 -0.418 1.925 sum -18.588 -2.921 0.904 18.837 Atomic orbital electron populations 1.23265 0.75922 1.03703 1.02671 1.86542 1.23619 1.32748 1.84707 1.20147 0.87699 0.81318 0.72329 1.90840 1.66551 1.36008 1.46249 1.19285 0.90145 0.94998 1.17972 1.24717 0.80357 0.99503 0.98683 1.84175 1.29241 1.21611 1.68966 1.19998 0.93331 0.79142 1.04289 1.22399 0.87955 0.95087 1.15381 1.74140 0.95933 1.27060 1.01812 1.49216 1.01909 1.04715 1.78806 1.18666 0.73533 0.95318 0.93314 0.93734 1.22212 1.02802 0.98574 0.97457 1.21238 0.93094 1.05840 1.36987 0.92009 1.24865 0.97926 0.95492 0.95350 1.69892 1.15471 1.22292 1.44564 0.86342 0.80547 0.80627 0.79297 1.19735 1.20789 1.20775 1.21469 0.89904 0.99050 1.07923 0.87972 0.91826 0.91814 0.76583 0.84855 0.79076 0.96724 0.95356 0.88955 0.92496 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.66 10.40 -40.68 -0.42 -4.08 16 3 C 0.54 6.83 7.95 34.42 0.27 7.11 16 4 O -0.51 -7.64 16.73 -19.29 -0.32 -7.96 16 5 C -0.22 -2.80 6.13 -105.28 -0.65 -3.45 16 6 C 0.04 0.45 11.91 30.14 0.36 0.81 16 7 O -0.15 -2.18 10.61 5.60 0.06 -2.12 16 8 C 0.08 1.25 7.11 -36.94 -0.26 0.99 16 9 C 0.00 -0.03 10.94 -14.88 -0.16 -0.19 16 10 N -0.17 -3.47 11.48 32.03 0.37 -3.10 16 11 N -0.61 -13.00 6.10 -5.88 -0.04 -13.03 16 12 C 0.29 7.29 3.23 -69.08 -0.22 7.07 16 13 H 0.04 1.24 8.14 -51.93 -0.42 0.81 16 14 C -0.15 -3.63 9.29 37.16 0.35 -3.29 16 15 C -0.53 -13.94 8.74 -34.44 -0.30 -14.24 16 16 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.21 11.32 55.43 0.63 -23.58 16 19 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.16 -2.14 10.67 -38.87 -0.41 -2.55 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.13 1.80 8.03 -52.49 -0.42 1.37 16 29 H 0.37 7.18 8.58 -182.60 -1.57 5.62 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -30.43 313.06 -5.32 -35.74 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.23 Total: 2.79 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.06 Total: -4.73 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.96 Total: -39.72 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.69 Total: -14.16 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.43 -5.32 -35.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758129827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.549 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds