Wall clock time and date at job start Mon Mar 30 2020 04:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34770 * 117.00116 * 2 1 4 4 O 1.21527 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.47301 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.36597 * 126.72517 * 0.02562 * 5 3 2 7 7 O 1.33824 * 108.50583 * 179.71665 * 6 5 3 8 8 C 1.34799 * 109.86216 * 0.44305 * 7 6 5 9 9 C 1.46782 * 125.73955 * 179.82070 * 8 7 6 10 10 N 1.29980 * 119.99840 * 359.69749 * 9 8 7 11 11 N 1.40098 * 119.99903 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00048 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46845 * 30.00557 * 12 11 10 14 14 C 1.52997 * 109.47473 * 270.00008 * 12 11 10 15 15 C 1.50706 * 109.47187 * 149.99611 * 12 11 10 16 16 H 1.07998 * 119.99629 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46997 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00497 * 19 17 15 23 23 C 1.35973 * 108.52482 * 359.55933 * 8 7 6 24 24 H 1.08992 * 109.47558 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47047 * 300.00831 * 1 2 3 26 26 H 1.09007 * 109.46684 * 60.00035 * 1 2 3 27 27 H 1.08002 * 125.74539 * 359.97438 * 6 5 3 28 28 H 1.08000 * 120.00168 * 179.69010 * 9 8 7 29 29 H 0.97002 * 120.00235 * 359.97438 * 11 10 9 30 30 H 1.09002 * 109.47153 * 59.99757 * 14 12 11 31 31 H 1.09001 * 109.46832 * 299.99948 * 14 12 11 32 32 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 33 33 H 0.96998 * 120.00365 * 179.97438 * 18 17 15 34 34 H 1.07997 * 126.73067 * 180.24500 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5349 1.2778 0.0006 6 6 4.4078 0.2271 0.0006 7 8 5.6553 0.7114 -0.0050 8 6 5.6235 2.0590 0.0009 9 6 6.7944 2.9442 0.0012 10 7 7.9916 2.4382 0.0012 11 7 9.1092 3.2831 0.0020 12 6 10.4586 2.7129 0.0026 13 1 10.4471 1.7518 -0.5116 14 6 10.9277 2.5140 1.4452 15 6 11.4007 3.6509 -0.7073 16 1 11.0312 4.5791 -1.1174 17 6 12.7344 3.3244 -0.8321 18 7 13.1844 2.1943 -0.3323 19 14 13.9023 4.4874 -1.7113 20 1 13.1534 5.6819 -2.1778 21 1 14.9760 4.9107 -0.7769 22 1 14.5060 3.7945 -2.8778 23 6 4.3244 2.4605 0.0008 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 4.1368 -0.8183 0.0007 28 1 6.6611 4.0160 0.0012 29 1 8.9895 4.2457 0.0021 30 1 10.2463 1.8355 1.9586 31 1 10.9392 3.4751 1.9592 32 1 11.9316 2.0893 1.4456 33 1 14.1226 1.9645 -0.4205 34 1 3.9629 3.4782 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758129827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:39 Heat of formation + Delta-G solvation = -48.877364 kcal Electronic energy + Delta-G solvation = -18647.701620 eV Core-core repulsion = 15354.930932 eV Total energy + Delta-G solvation = -3292.770688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.70390 -41.17256 -38.18035 -37.47637 -35.95916 -34.33945 -33.48027 -31.37308 -29.07787 -28.27829 -27.29410 -24.94898 -24.17372 -22.27018 -22.15538 -21.04264 -19.27713 -18.21633 -18.11614 -17.58420 -17.50588 -16.98340 -16.94767 -16.77996 -15.86663 -15.06703 -14.58121 -14.42645 -14.30593 -14.25359 -13.92567 -13.72597 -13.41821 -12.93206 -12.89477 -12.74344 -12.55923 -12.25216 -12.09124 -11.80190 -11.78676 -11.26838 -11.12505 -11.01374 -10.60499 -10.03410 -8.47409 -8.18282 -6.35521 0.06487 0.36727 1.43177 1.44320 1.55849 1.60692 1.79866 1.83879 2.15116 2.17662 2.45914 3.10967 3.53874 3.75865 3.97732 4.31464 4.36175 4.37884 4.41128 4.65894 4.74121 4.78947 4.87719 4.98344 5.10713 5.15871 5.19850 5.28505 5.50243 5.69685 5.83161 5.97246 6.15503 6.35777 6.67726 6.81605 7.35769 7.65080 8.86907 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.057834 B = 0.002791 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.028118 B =10028.425544 C =10213.212267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.545 3.455 4 O -0.538 6.538 5 C -0.246 4.246 6 C 0.076 3.924 7 O -0.168 6.168 8 C 0.042 3.958 9 C 0.045 3.955 10 N -0.231 5.231 11 N -0.630 5.630 12 C 0.305 3.695 13 H 0.003 0.997 14 C -0.137 4.137 15 C -0.546 4.546 16 H 0.064 0.936 17 C 0.018 3.982 18 N -0.914 5.914 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.281 1.281 23 C -0.133 4.133 24 H 0.137 0.863 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.260 0.740 28 H 0.162 0.838 29 H 0.379 0.621 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.267 0.733 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.427 -3.900 1.067 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.272 6.272 3 C 0.392 3.608 4 O -0.430 6.430 5 C -0.249 4.249 6 C 0.004 3.996 7 O -0.061 6.061 8 C -0.009 4.009 9 C -0.164 4.164 10 N -0.043 5.043 11 N -0.367 5.367 12 C 0.201 3.799 13 H 0.021 0.979 14 C -0.197 4.197 15 C -0.585 4.585 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.553 5.553 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.207 1.207 23 C -0.156 4.156 24 H 0.155 0.845 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.276 0.724 28 H 0.179 0.821 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.448 -4.807 1.085 21.033 hybrid contribution 0.079 1.735 -0.336 1.769 sum -20.369 -3.072 0.748 20.613 Atomic orbital electron populations 1.23610 0.73995 1.06028 1.02677 1.86527 1.25433 1.31195 1.84027 1.20094 0.87552 0.81605 0.71592 1.90830 1.67120 1.37096 1.47919 1.19417 0.90662 0.95179 1.19595 1.25587 0.78810 1.00996 0.94256 1.84183 1.30935 1.21679 1.69322 1.19916 0.93260 0.79478 1.08244 1.23013 0.87340 0.96910 1.09131 1.74153 0.96556 1.27463 1.06147 1.48575 1.01237 1.04758 1.82153 1.18196 0.75616 0.93322 0.92762 0.97948 1.22030 1.01468 0.98649 0.97537 1.21536 0.93758 1.06088 1.37156 0.91792 1.25713 0.99527 0.96961 0.96019 1.70018 1.15861 1.23832 1.45563 0.85309 0.78350 0.78685 0.78045 1.19019 1.20237 1.20656 1.21726 0.89309 1.00137 1.04465 0.84512 0.91852 0.91873 0.72400 0.82139 0.78279 0.96304 0.94800 0.91180 0.92367 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.53 16 2 O -0.36 -6.19 10.40 -56.81 -0.59 -6.79 16 3 C 0.54 12.53 7.95 70.21 0.56 13.08 16 4 O -0.54 -15.31 16.73 19.75 0.33 -14.98 16 5 C -0.25 -5.58 6.13 -20.29 -0.12 -5.71 16 6 C 0.08 1.48 11.91 67.44 0.80 2.29 16 7 O -0.17 -4.67 10.61 -2.87 -0.03 -4.71 16 8 C 0.04 1.17 7.11 23.98 0.17 1.35 16 9 C 0.04 1.41 10.94 87.20 0.95 2.36 16 10 N -0.23 -9.37 11.48 -52.58 -0.60 -9.97 16 11 N -0.63 -27.48 6.10 -172.52 -1.05 -28.54 16 12 C 0.30 15.72 3.23 44.25 0.14 15.86 16 13 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 14 C -0.14 -6.83 9.29 71.98 0.67 -6.16 16 15 C -0.55 -29.20 8.74 25.60 0.22 -28.97 16 16 H 0.06 3.30 7.79 -2.91 -0.02 3.28 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.91 -51.29 11.32 21.45 0.24 -51.05 16 19 Si 0.97 42.02 29.54 68.60 2.03 44.04 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 C -0.13 -3.25 10.67 22.73 0.24 -3.01 16 24 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.26 2.50 8.06 -2.91 -0.02 2.47 16 28 H 0.16 4.00 8.03 -2.91 -0.02 3.98 16 29 H 0.38 14.82 8.58 -213.32 -1.83 12.99 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 3.77 6.07 -2.38 -0.01 3.75 16 33 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -67.49 313.06 4.90 -62.59 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.70 Total: 15.34 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.29 Total: -5.96 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -1.41 Total: -89.55 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.29 Total: -26.47 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -67.49 4.90 -62.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758129827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.714 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds