Wall clock time and date at job start Mon Mar 30 2020 04:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34764 * 117.00065 * 2 1 4 4 O 1.21535 * 120.00243 * 359.97438 * 3 2 1 5 5 C 1.47300 * 120.00163 * 179.72363 * 3 2 1 6 6 C 1.36599 * 126.72484 * 359.69150 * 5 3 2 7 7 O 1.33823 * 108.50846 * 179.83270 * 6 5 3 8 8 C 1.34807 * 109.86016 * 0.43941 * 7 6 5 9 9 C 1.46780 * 125.73464 * 179.75110 * 8 7 6 10 10 N 1.29979 * 120.00513 * 359.97241 * 9 8 7 11 11 N 1.40098 * 120.00548 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00327 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47155 * 330.00646 * 12 11 10 14 14 C 1.52999 * 109.47028 * 90.00448 * 12 11 10 15 15 C 1.50696 * 109.47087 * 210.00644 * 12 11 10 16 16 H 1.07996 * 120.00167 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99602 * 180.02562 * 15 12 11 18 18 N 1.31525 * 119.99879 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 120.00125 * 359.97438 * 17 15 12 20 20 H 1.48496 * 109.46876 * 90.00452 * 19 17 15 21 21 H 1.48501 * 109.46972 * 210.00155 * 19 17 15 22 22 H 1.48497 * 109.46957 * 330.00245 * 19 17 15 23 23 C 1.35977 * 108.52199 * 359.72670 * 8 7 6 24 24 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46967 * 299.99913 * 1 2 3 26 26 H 1.09002 * 109.46640 * 60.00116 * 1 2 3 27 27 H 1.08007 * 125.74398 * 359.97438 * 6 5 3 28 28 H 1.08000 * 119.99656 * 179.97438 * 9 8 7 29 29 H 0.97003 * 119.99593 * 0.02562 * 11 10 9 30 30 H 1.09005 * 109.47045 * 300.00248 * 14 12 11 31 31 H 1.09000 * 109.46991 * 60.00097 * 14 12 11 32 32 H 1.08994 * 109.47390 * 180.02562 * 14 12 11 33 33 H 0.96998 * 119.99419 * 180.02562 * 18 17 15 34 34 H 1.07999 * 126.71689 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5348 1.2779 0.0062 6 6 4.4078 0.2273 0.0181 7 8 5.6553 0.7116 0.0164 8 6 5.6234 2.0593 0.0134 9 6 6.7942 2.9445 0.0160 10 7 7.9915 2.4386 0.0223 11 7 9.1091 3.2835 0.0243 12 6 10.4585 2.7133 0.0320 13 1 10.4446 1.7537 0.5489 14 6 10.9345 2.5101 -1.4078 15 6 11.3971 3.6535 0.7434 16 1 11.0256 4.5830 1.1489 17 6 12.7302 3.3274 0.8757 18 7 13.5493 4.1477 1.4971 19 14 13.3728 1.7200 0.1737 20 1 13.8202 1.9349 -1.2258 21 1 14.5173 1.2450 0.9920 22 1 12.2915 0.7024 0.1971 23 6 4.3242 2.4606 0.0069 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.1368 -0.8182 0.0252 28 1 6.6609 4.0162 0.0127 29 1 8.9893 4.2461 0.0213 30 1 10.2555 1.8301 -1.9224 31 1 10.9484 3.4697 -1.9247 32 1 11.9383 2.0855 -1.4022 33 1 14.4872 3.9184 1.5898 34 1 3.9628 3.4783 0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758129828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:43 Heat of formation + Delta-G solvation = -42.641586 kcal Electronic energy + Delta-G solvation = -18713.026774 eV Core-core repulsion = 15420.526489 eV Total energy + Delta-G solvation = -3292.500285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.71017 -41.17358 -38.29790 -37.47889 -35.99402 -34.34908 -33.81373 -31.69794 -29.33555 -28.37941 -27.16857 -24.95431 -24.23125 -22.27473 -22.15128 -21.06706 -19.41478 -18.38374 -18.16649 -17.58727 -17.50541 -17.23211 -16.95211 -16.81900 -15.86625 -15.10003 -15.07244 -14.45653 -14.29883 -14.22351 -14.10985 -13.96717 -13.77223 -13.33026 -12.90652 -12.84258 -12.70435 -12.10705 -11.80430 -11.78944 -11.52374 -11.39072 -11.14430 -11.11287 -10.84311 -10.08126 -8.52841 -8.37012 -6.44544 0.05134 0.34698 1.31406 1.37991 1.48004 1.60226 1.74662 1.81773 2.13611 2.14003 2.27964 2.98715 3.53235 3.72922 3.96484 4.30483 4.32541 4.37672 4.39747 4.46023 4.56637 4.70293 4.75344 4.79426 4.84060 4.99095 5.14789 5.20831 5.28414 5.47905 5.49567 5.91875 6.06582 6.41530 6.61633 6.67590 7.21593 7.56082 8.78624 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054273 B = 0.002961 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.785463 B = 9454.689135 C = 9726.291517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.544 3.456 4 O -0.539 6.539 5 C -0.247 4.247 6 C 0.079 3.921 7 O -0.166 6.166 8 C 0.041 3.959 9 C 0.054 3.946 10 N -0.228 5.228 11 N -0.627 5.627 12 C 0.278 3.722 13 H 0.028 0.972 14 C -0.158 4.158 15 C -0.537 4.537 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.939 5.939 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.294 1.294 22 H -0.250 1.250 23 C -0.132 4.132 24 H 0.137 0.863 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.162 0.838 29 H 0.381 0.619 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.271 0.729 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.488 -10.590 -5.191 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.391 3.609 4 O -0.430 6.430 5 C -0.249 4.249 6 C 0.006 3.994 7 O -0.059 6.059 8 C -0.010 4.010 9 C -0.156 4.156 10 N -0.040 5.040 11 N -0.365 5.365 12 C 0.173 3.827 13 H 0.046 0.954 14 C -0.217 4.217 15 C -0.576 4.576 16 H 0.063 0.937 17 C -0.176 4.176 18 N -0.578 5.578 19 Si 0.775 3.225 20 H -0.186 1.186 21 H -0.221 1.221 22 H -0.174 1.174 23 C -0.155 4.155 24 H 0.155 0.845 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.277 0.723 28 H 0.178 0.822 29 H 0.219 0.781 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -22.501 -11.347 -5.123 25.716 hybrid contribution -0.008 1.227 0.005 1.227 sum -22.508 -10.120 -5.119 25.204 Atomic orbital electron populations 1.23607 0.74020 1.06021 1.02655 1.86523 1.25402 1.31188 1.84026 1.20122 0.87619 0.81598 0.71593 1.90837 1.67163 1.37125 1.47917 1.19413 0.90629 0.95227 1.19661 1.25594 0.78782 1.00963 0.94013 1.84176 1.30850 1.21526 1.69319 1.19845 0.93117 0.79527 1.08512 1.23017 0.87318 0.96992 1.08227 1.74114 0.96331 1.26879 1.06659 1.48210 1.00836 1.04883 1.82526 1.18554 0.77451 0.94018 0.92642 0.95376 1.22468 0.99384 1.01129 0.98720 1.21284 0.93567 1.05967 1.36784 0.93710 1.25677 0.96678 1.00353 0.94878 1.70004 1.05333 1.38758 1.43664 0.85860 0.78151 0.80181 0.78323 1.18553 1.22149 1.17445 1.21743 0.89432 1.00148 1.04174 0.84507 0.91925 0.91860 0.72309 0.82171 0.78061 0.92846 0.92515 0.93802 0.92019 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -5.83 10.40 -56.75 -0.59 -6.42 16 3 C 0.54 11.94 7.95 70.21 0.56 12.50 16 4 O -0.54 -14.92 16.73 19.72 0.33 -14.59 16 5 C -0.25 -5.23 6.13 -20.29 -0.12 -5.36 16 6 C 0.08 1.38 11.91 67.44 0.80 2.19 16 7 O -0.17 -4.17 10.61 -2.95 -0.03 -4.20 16 8 C 0.04 1.06 7.11 23.98 0.17 1.23 16 9 C 0.05 1.56 10.94 87.20 0.95 2.51 16 10 N -0.23 -8.47 11.48 -52.59 -0.60 -9.08 16 11 N -0.63 -25.69 6.10 -172.53 -1.05 -26.74 16 12 C 0.28 13.02 2.82 44.24 0.12 13.15 16 13 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 14 C -0.16 -6.63 9.00 71.98 0.65 -5.98 16 15 C -0.54 -29.64 9.32 25.60 0.24 -29.40 16 16 H 0.04 2.70 8.03 -2.91 -0.02 2.68 16 17 C 0.02 1.32 5.45 84.65 0.46 1.78 16 18 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 19 Si 0.95 43.38 24.37 68.60 1.67 45.05 16 20 H -0.26 -11.16 6.87 99.48 0.68 -10.47 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.25 -10.85 6.53 99.48 0.65 -10.21 16 23 C -0.13 -3.02 10.67 22.73 0.24 -2.78 16 24 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.26 1.99 8.06 -2.91 -0.02 1.96 16 28 H 0.16 3.74 8.03 -2.91 -0.02 3.72 16 29 H 0.38 14.56 8.58 -213.32 -1.83 12.73 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -70.49 306.24 4.52 -65.97 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.78 Total: 15.03 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.27 Total: -8.65 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -1.36 Total: -92.18 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.29 Total: -25.22 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.05 kcal Total: -70.49 4.52 -65.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758129828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.327 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds