Wall clock time and date at job start Mon Mar 30 2020 04:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47256 * 2 1 4 4 C 1.50705 * 109.46940 * 239.99896 * 2 1 3 5 5 H 1.07999 * 119.99877 * 240.00078 * 4 2 1 6 6 C 1.37877 * 119.99647 * 60.00210 * 4 2 1 7 7 N 1.31516 * 120.00549 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47250 * 59.99594 * 8 6 4 10 10 H 1.48504 * 109.46839 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47133 * 299.99337 * 8 6 4 12 12 N 1.46498 * 109.47070 * 120.00118 * 2 1 3 13 13 N 1.40109 * 119.99760 * 269.71824 * 12 2 1 14 14 C 1.29755 * 119.99462 * 180.27695 * 13 12 2 15 15 C 1.47427 * 119.99683 * 180.02562 * 14 13 12 16 16 C 1.39712 * 120.11501 * 180.02562 * 15 14 13 17 17 C 1.37879 * 120.02059 * 179.97438 * 16 15 14 18 18 C 1.38830 * 120.25104 * 0.02562 * 17 16 15 19 19 O 1.35978 * 119.88626 * 180.02562 * 18 17 16 20 20 C 1.39057 * 120.22925 * 0.02682 * 18 17 16 21 21 O 1.36095 * 120.01854 * 180.02562 * 20 18 17 22 22 C 1.38740 * 119.96953 * 359.67491 * 20 18 17 23 23 O 1.35946 * 120.12358 * 180.29822 * 22 20 18 24 24 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46576 * 300.00118 * 1 2 3 26 26 H 1.08994 * 109.47252 * 59.99913 * 1 2 3 27 27 H 0.96993 * 119.99987 * 180.02562 * 7 6 4 28 28 H 0.97001 * 120.00384 * 90.00306 * 12 2 1 29 29 H 1.07992 * 120.00761 * 0.02562 * 14 13 12 30 30 H 1.07994 * 119.98470 * 359.96560 * 16 15 14 31 31 H 1.08003 * 119.87199 * 180.02562 * 17 16 15 32 32 H 0.96693 * 114.00124 * 90.00114 * 19 18 17 33 33 H 0.96705 * 113.99800 * 89.99133 * 21 20 18 34 34 H 0.96702 * 113.99977 * 270.28300 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8258 -0.4206 -5.2204 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6906 1.1961 13 7 2.2574 0.0310 2.3731 14 6 2.6950 -0.5799 3.4309 15 6 2.9461 0.1792 4.6695 16 6 3.4178 -0.4759 5.8098 17 6 3.6525 0.2360 6.9670 18 6 3.4213 1.6044 7.0053 19 8 3.6558 2.2994 8.1503 20 6 2.9508 2.2668 5.8768 21 8 2.7262 3.6084 5.9190 22 6 2.7174 1.5606 4.7056 23 8 2.2632 2.2061 3.5987 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 0.7081 1.1608 -3.4844 28 1 2.1800 -1.6468 1.1722 29 1 2.8754 -1.6443 3.4041 30 1 3.5986 -1.5403 5.7847 31 1 4.0176 -0.2728 7.8469 32 1 4.5548 2.6481 8.2217 33 1 3.4926 4.1435 5.6712 34 1 1.2991 2.2485 3.5359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:34 Heat of formation + Delta-G solvation = -55.021806 kcal Electronic energy + Delta-G solvation = -19433.539720 eV Core-core repulsion = 16140.502588 eV Total energy + Delta-G solvation = -3293.037131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32567 -37.82181 -36.95677 -36.14837 -35.57405 -33.92220 -31.53873 -29.49941 -29.18001 -26.89143 -25.25435 -23.26079 -22.56217 -20.69571 -20.17613 -18.95274 -18.03951 -17.29027 -17.22331 -16.27792 -15.59348 -15.26430 -15.02996 -14.94956 -14.30631 -13.84513 -13.50242 -12.90841 -12.84438 -12.51348 -12.36891 -11.86807 -11.77062 -11.38287 -11.05976 -10.88384 -10.80859 -10.59875 -10.27790 -10.24823 -10.13109 -9.39769 -9.07578 -8.72058 -8.56781 -8.49337 -6.84307 -6.16310 -4.25008 0.88601 1.15016 2.80681 3.23725 3.28642 3.29864 3.70108 3.72503 3.92233 4.10838 4.33840 4.62466 4.96760 5.06523 5.16211 5.25650 5.61805 5.73337 5.85963 6.12107 6.23005 6.38605 6.54492 6.69532 6.90689 6.94731 7.10846 7.31410 7.54258 7.68135 7.74650 7.81319 8.02202 8.10467 8.25230 8.81604 9.25874 9.41806 10.89492 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039602 B = 0.003724 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.872358 B = 7517.836007 C = 7881.966205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.296 3.704 3 H 0.045 0.955 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.619 5.619 13 N -0.162 5.162 14 C -0.031 4.031 15 C -0.023 4.023 16 C -0.095 4.095 17 C -0.138 4.138 18 C 0.077 3.923 19 O -0.489 6.489 20 C 0.053 3.947 21 O -0.483 6.483 22 C 0.113 3.887 23 O -0.464 6.464 24 H 0.025 0.975 25 H 0.012 0.988 26 H 0.091 0.909 27 H 0.265 0.735 28 H 0.368 0.632 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.383 0.617 33 H 0.386 0.614 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 0.179 16.785 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.194 3.806 3 H 0.063 0.937 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.355 5.355 13 N 0.023 4.977 14 C -0.237 4.237 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.156 4.156 18 C 0.031 3.969 19 O -0.298 6.298 20 C 0.007 3.993 21 O -0.292 6.292 22 C 0.064 3.936 23 O -0.274 6.274 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.204 0.796 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.238 0.762 33 H 0.241 0.759 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.469 1.055 16.199 16.837 hybrid contribution 1.047 -1.463 -0.832 1.982 sum 5.515 -0.408 15.366 16.331 Atomic orbital electron populations 1.22198 0.98906 0.99177 1.00583 1.18573 0.90156 0.93720 0.78150 0.93737 1.21194 1.32452 1.13348 0.90254 0.92281 1.24852 0.94788 0.94977 0.98941 1.69873 1.35850 1.22460 1.24080 0.86481 0.79195 0.79583 0.81691 1.20176 1.21039 1.20166 1.49257 1.71182 1.07806 1.07230 1.74195 1.02753 1.27051 0.93661 1.23285 1.11719 0.96673 0.92064 1.18855 0.99550 0.91368 0.92800 1.20930 0.99427 1.00097 0.91095 1.21147 1.02750 0.93039 0.98702 1.18632 1.01870 0.90571 0.85855 1.84906 1.35562 1.72549 1.36793 1.19111 1.04029 0.84780 0.91348 1.84874 1.40366 1.13245 1.90691 1.18815 0.99745 0.89545 0.85461 1.84817 1.27025 1.76410 1.39167 0.95563 0.96873 0.89092 0.92457 0.79636 0.87854 0.84782 0.84933 0.76160 0.75909 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.29 37.16 0.35 -3.26 16 2 C 0.30 7.45 3.23 -69.08 -0.22 7.23 16 3 H 0.04 1.26 8.14 -51.93 -0.42 0.83 16 4 C -0.53 -14.22 8.74 -34.44 -0.30 -14.52 16 5 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.62 -13.44 6.10 -5.88 -0.04 -13.48 16 13 N -0.16 -3.23 9.33 32.14 0.30 -2.93 16 14 C -0.03 -0.52 10.75 -14.69 -0.16 -0.67 16 15 C -0.02 -0.33 5.88 -104.92 -0.62 -0.95 16 16 C -0.09 -1.08 9.78 -39.16 -0.38 -1.47 16 17 C -0.14 -1.47 9.96 -39.49 -0.39 -1.86 16 18 C 0.08 0.93 6.71 -39.06 -0.26 0.66 16 19 O -0.49 -5.15 13.27 -34.47 -0.46 -5.60 16 20 C 0.05 0.73 6.72 -39.09 -0.26 0.46 16 21 O -0.48 -6.22 13.06 -45.45 -0.59 -6.81 16 22 C 0.11 1.73 6.72 -38.71 -0.26 1.47 16 23 O -0.46 -7.79 11.15 -34.30 -0.38 -8.17 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.37 7.39 8.58 -182.59 -1.57 5.83 16 29 H 0.10 1.50 8.02 -52.49 -0.42 1.08 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.38 2.05 9.06 45.56 0.41 2.46 16 33 H 0.39 3.27 9.07 45.56 0.41 3.68 16 34 H 0.39 5.74 9.06 45.56 0.41 6.15 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -31.97 304.67 -6.30 -38.27 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -2.72 Total: 13.59 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.61 Total: -11.20 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.89 Total: -40.29 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.43 Total: -20.59 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.97 -6.30 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.747 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds