Wall clock time and date at job start Mon Mar 30 2020 04:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.29758 * 119.99610 * 180.02562 * 13 12 2 15 15 C 1.47421 * 119.99951 * 180.02562 * 14 13 12 16 16 C 1.39709 * 120.11265 * 180.02562 * 15 14 13 17 17 C 1.37888 * 120.02100 * 179.97438 * 16 15 14 18 18 C 1.38826 * 120.24894 * 0.02562 * 17 16 15 19 19 O 1.35971 * 119.88830 * 179.97438 * 18 17 16 20 20 C 1.39067 * 120.22704 * 0.02562 * 18 17 16 21 21 O 1.36098 * 120.01087 * 180.02562 * 20 18 17 22 22 C 1.38729 * 119.97234 * 359.67888 * 20 18 17 23 23 O 1.35946 * 120.12588 * 180.29589 * 22 20 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 29 29 H 1.07998 * 120.00177 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.99175 * 359.96645 * 16 15 14 31 31 H 1.07996 * 119.87025 * 180.02562 * 17 16 15 32 32 H 0.96702 * 113.99728 * 89.99925 * 19 18 17 33 33 H 0.96703 * 113.99859 * 90.00091 * 21 20 18 34 34 H 0.96697 * 114.00016 * 270.28191 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6840 -0.5819 -3.4343 15 6 2.9303 0.1764 -4.6744 16 6 3.3951 -0.4801 -5.8167 17 6 3.6243 0.2309 -6.9757 18 6 3.3954 1.5996 -7.0134 19 8 3.6244 2.2936 -8.1600 20 6 2.9339 2.2637 -5.8820 21 8 2.7105 3.6056 -5.9240 22 6 2.6943 1.5565 -4.7128 23 8 2.2373 2.2015 -3.6067 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.1800 -1.6468 -1.1721 29 1 2.8641 -1.6464 -3.4075 30 1 3.5750 -1.5447 -5.7920 31 1 3.9831 -0.2791 -7.8575 32 1 2.8575 2.3480 -8.7466 33 1 1.8126 3.8467 -6.1900 34 1 2.9371 2.5377 -3.0303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:37 Heat of formation + Delta-G solvation = -55.199481 kcal Electronic energy + Delta-G solvation = -19433.079114 eV Core-core repulsion = 16140.034278 eV Total energy + Delta-G solvation = -3293.044836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32502 -37.82066 -36.95725 -36.14830 -35.57144 -33.92315 -31.54070 -29.49711 -29.17923 -26.88360 -25.25280 -23.26116 -22.56072 -20.69338 -20.17994 -18.95127 -18.03620 -17.29242 -17.22446 -16.27509 -15.59320 -15.27280 -15.03595 -14.94302 -14.29784 -13.85303 -13.50981 -12.93798 -12.69830 -12.54145 -12.46541 -11.88813 -11.71242 -11.39871 -11.07865 -10.85217 -10.80360 -10.57895 -10.28881 -10.24965 -10.12011 -9.39566 -9.05150 -8.72651 -8.56929 -8.49925 -6.84266 -6.17032 -4.25773 0.88645 1.15111 2.80740 3.21039 3.28806 3.31679 3.70717 3.72037 3.92181 4.10696 4.33297 4.62869 4.96802 5.06538 5.15578 5.25694 5.61840 5.73475 5.86086 6.12152 6.23039 6.38668 6.54641 6.70352 6.92038 6.98987 7.12699 7.31377 7.54313 7.68182 7.73767 7.82641 8.02549 8.09915 8.25293 8.81603 9.25832 9.41311 10.88709 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039896 B = 0.003722 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.650623 B = 7520.783536 C = 7891.523109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.297 3.703 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.619 5.619 13 N -0.162 5.162 14 C -0.031 4.031 15 C -0.023 4.023 16 C -0.095 4.095 17 C -0.138 4.138 18 C 0.077 3.923 19 O -0.489 6.489 20 C 0.053 3.947 21 O -0.482 6.482 22 C 0.113 3.887 23 O -0.465 6.465 24 H 0.025 0.975 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.368 0.632 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.383 0.617 33 H 0.385 0.615 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -0.381 -17.766 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.195 3.805 3 H 0.061 0.939 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.355 5.355 13 N 0.023 4.977 14 C -0.237 4.237 15 C -0.026 4.026 16 C -0.115 4.115 17 C -0.156 4.156 18 C 0.031 3.969 19 O -0.298 6.298 20 C 0.007 3.993 21 O -0.292 6.292 22 C 0.065 3.935 23 O -0.275 6.275 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.238 0.762 33 H 0.241 0.759 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.557 0.697 -16.818 17.026 hybrid contribution -0.010 -1.628 0.521 1.709 sum 2.546 -0.931 -16.298 16.521 Atomic orbital electron populations 1.22195 0.98894 0.99154 1.00686 1.18570 0.90246 0.93588 0.78138 0.93861 1.21270 1.32318 1.13332 0.90216 0.92166 1.24857 0.94794 0.94986 0.98969 1.69899 1.35928 1.22521 1.23863 0.86373 0.78619 0.79545 0.82454 1.19786 1.20798 1.20820 1.49260 1.71292 1.07898 1.07030 1.74194 1.02278 1.27463 0.93733 1.23284 1.11502 0.96783 0.92173 1.18852 0.98711 0.92018 0.92995 1.20932 0.99431 1.00074 0.91112 1.21147 1.02770 0.92471 0.99260 1.18633 1.02336 0.89791 0.86170 1.84910 1.39737 1.75168 1.29976 1.19112 1.02877 0.83883 0.93405 1.84878 1.35543 1.17728 1.91001 1.18809 0.97076 0.89676 0.87984 1.84803 1.35111 1.74521 1.33076 0.95617 0.96681 0.89142 0.92570 0.79625 0.87857 0.84784 0.84936 0.76176 0.75943 0.74956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 37.16 0.35 -3.35 16 2 C 0.30 7.46 3.23 -69.08 -0.22 7.24 16 3 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.53 -14.12 8.74 -34.44 -0.30 -14.42 16 5 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.62 -13.44 6.10 -5.88 -0.04 -13.47 16 13 N -0.16 -3.23 9.33 32.15 0.30 -2.93 16 14 C -0.03 -0.52 10.75 -14.69 -0.16 -0.67 16 15 C -0.02 -0.33 5.88 -104.92 -0.62 -0.95 16 16 C -0.09 -1.08 9.78 -39.16 -0.38 -1.47 16 17 C -0.14 -1.47 9.96 -39.49 -0.39 -1.86 16 18 C 0.08 0.93 6.71 -39.06 -0.26 0.66 16 19 O -0.49 -5.14 13.27 -34.46 -0.46 -5.60 16 20 C 0.05 0.73 6.72 -39.09 -0.26 0.46 16 21 O -0.48 -6.22 13.06 -45.46 -0.59 -6.81 16 22 C 0.11 1.73 6.72 -38.71 -0.26 1.47 16 23 O -0.47 -7.79 11.15 -34.29 -0.38 -8.17 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 28 H 0.37 7.40 8.58 -182.60 -1.57 5.83 16 29 H 0.10 1.50 8.02 -52.49 -0.42 1.08 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.38 2.03 9.06 45.56 0.41 2.45 16 33 H 0.39 3.24 9.07 45.56 0.41 3.65 16 34 H 0.39 5.81 9.06 45.56 0.41 6.22 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -31.94 304.68 -6.30 -38.24 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -2.72 Total: 13.60 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.61 Total: -11.19 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.89 Total: -40.22 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -1.43 Total: -20.58 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.94 -6.30 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.961 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds