Wall clock time and date at job start Mon Mar 30 2020 04:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 N 1.40105 * 119.99660 * 89.99925 * 12 2 1 14 14 C 1.29758 * 119.99610 * 180.02562 * 13 12 2 15 15 C 1.47421 * 119.99951 * 180.02562 * 14 13 12 16 16 C 1.39709 * 120.11265 * 180.02562 * 15 14 13 17 17 C 1.37888 * 120.02100 * 179.97438 * 16 15 14 18 18 C 1.38826 * 120.24894 * 0.02562 * 17 16 15 19 19 O 1.35971 * 119.88830 * 179.97438 * 18 17 16 20 20 C 1.39067 * 120.22704 * 0.02562 * 18 17 16 21 21 O 1.36098 * 120.01087 * 180.02562 * 20 18 17 22 22 C 1.38729 * 119.97234 * 359.67888 * 20 18 17 23 23 O 1.35946 * 120.12588 * 180.29589 * 22 20 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00160 * 270.00687 * 12 2 1 29 29 H 1.07998 * 120.00177 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.99175 * 359.96645 * 16 15 14 31 31 H 1.07996 * 119.87025 * 180.02562 * 17 16 15 32 32 H 0.96702 * 113.99728 * 89.99925 * 19 18 17 33 33 H 0.96703 * 113.99859 * 90.00091 * 21 20 18 34 34 H 0.96697 * 114.00016 * 270.28191 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1961 13 7 2.2519 0.0299 -2.3747 14 6 2.6840 -0.5819 -3.4343 15 6 2.9303 0.1764 -4.6744 16 6 3.3951 -0.4801 -5.8167 17 6 3.6243 0.2309 -6.9757 18 6 3.3954 1.5996 -7.0134 19 8 3.6244 2.2936 -8.1600 20 6 2.9339 2.2637 -5.8820 21 8 2.7105 3.6056 -5.9240 22 6 2.6943 1.5565 -4.7128 23 8 2.2373 2.2015 -3.6067 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7081 1.1610 3.4844 28 1 2.1800 -1.6468 -1.1721 29 1 2.8641 -1.6464 -3.4075 30 1 3.5750 -1.5447 -5.7920 31 1 3.9831 -0.2791 -7.8575 32 1 2.8575 2.3480 -8.7466 33 1 1.8126 3.8467 -6.1900 34 1 2.9371 2.5377 -3.0303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:37 Heat of formation + Delta-G solvation = -81.771770 kcal Electronic energy + Delta-G solvation = -19434.231375 eV Core-core repulsion = 16140.034278 eV Total energy + Delta-G solvation = -3294.197097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32585 -38.87916 -38.09831 -37.54842 -36.64780 -35.64802 -33.27306 -30.85707 -30.18674 -28.40198 -27.28038 -24.46184 -23.57642 -22.31918 -21.63176 -19.93570 -19.09437 -18.84542 -18.34287 -17.73425 -17.00821 -16.55812 -16.48165 -15.94935 -15.68667 -15.05535 -14.80696 -14.50395 -14.25779 -13.86116 -13.68070 -13.36621 -12.98184 -12.90917 -12.77915 -12.56597 -12.33639 -12.15599 -12.03806 -11.83083 -11.24168 -11.08003 -10.62392 -10.58376 -9.83873 -9.55282 -8.36935 -8.16554 -6.34905 -0.15249 0.17928 1.42277 1.43314 1.55051 1.64369 2.18051 2.47355 2.65183 2.97914 3.11362 3.23878 3.59877 3.90569 4.07323 4.32876 4.52546 4.70804 4.76226 4.85300 4.98082 5.09506 5.14844 5.26560 5.29959 5.43636 5.56688 5.67084 5.78910 5.88408 6.18185 6.41329 6.58125 6.80568 6.85089 6.99570 7.36870 7.80402 8.87424 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039896 B = 0.003722 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.650623 B = 7520.783536 C = 7891.523109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.309 3.691 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.640 5.640 13 N -0.213 5.213 14 C 0.009 3.991 15 C -0.058 4.058 16 C -0.073 4.073 17 C -0.131 4.131 18 C 0.092 3.908 19 O -0.497 6.497 20 C 0.037 3.963 21 O -0.496 6.496 22 C 0.094 3.906 23 O -0.486 6.486 24 H 0.029 0.971 25 H 0.014 0.986 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.372 0.628 29 H 0.128 0.872 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.409 0.591 33 H 0.402 0.598 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -1.944 -20.098 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.205 3.795 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.376 5.376 13 N -0.024 5.024 14 C -0.200 4.200 15 C -0.061 4.061 16 C -0.094 4.094 17 C -0.149 4.149 18 C 0.046 3.954 19 O -0.310 6.310 20 C -0.009 4.009 21 O -0.308 6.308 22 C 0.046 3.954 23 O -0.297 6.297 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.209 0.791 29 H 0.145 0.855 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.268 0.732 33 H 0.260 0.740 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.656 -0.860 -19.192 19.556 hybrid contribution -0.274 -1.062 0.830 1.375 sum 3.382 -1.921 -18.362 18.770 Atomic orbital electron populations 1.22009 0.99033 0.98915 0.99486 1.18088 0.90078 0.91673 0.79662 0.97932 1.21561 1.32423 1.13469 0.91147 0.92013 1.25709 0.94885 0.95633 1.01943 1.70028 1.36867 1.23785 1.24593 0.85326 0.78131 0.78463 0.78570 1.19039 1.20601 1.20247 1.48666 1.74110 1.07712 1.07151 1.74265 1.06056 1.27932 0.94102 1.23934 1.06333 0.98127 0.91618 1.18992 1.01706 0.91883 0.93470 1.21293 0.96692 1.01588 0.89778 1.21507 1.01490 0.91804 1.00083 1.18779 1.00242 0.90354 0.86073 1.84841 1.41425 1.75038 1.29671 1.19233 1.03878 0.84157 0.93609 1.84828 1.37111 1.17656 1.91207 1.19148 0.97934 0.90359 0.87986 1.84776 1.35916 1.74975 1.33985 0.95174 0.96664 0.91343 0.92434 0.79089 0.85461 0.81515 0.81422 0.73178 0.74039 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.29 71.98 0.67 -6.26 16 2 C 0.31 16.24 3.23 44.25 0.14 16.39 16 3 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 4 C -0.55 -29.74 8.74 25.60 0.22 -29.52 16 5 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 6 C 0.02 1.01 5.30 84.65 0.45 1.45 16 7 N -0.91 -52.01 11.32 21.44 0.24 -51.76 16 8 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.64 -28.62 6.10 -172.51 -1.05 -29.67 16 13 N -0.21 -8.68 9.33 -52.21 -0.49 -9.16 16 14 C 0.01 0.28 10.75 87.42 0.94 1.22 16 15 C -0.06 -1.58 5.88 -20.06 -0.12 -1.70 16 16 C -0.07 -1.38 9.78 22.54 0.22 -1.16 16 17 C -0.13 -2.18 9.96 22.33 0.22 -1.96 16 18 C 0.09 1.91 6.71 22.61 0.15 2.07 16 19 O -0.50 -8.63 13.27 -79.07 -1.05 -9.68 16 20 C 0.04 0.96 6.72 22.59 0.15 1.11 16 21 O -0.50 -12.43 13.06 -70.37 -0.92 -13.35 16 22 C 0.09 2.84 6.72 22.83 0.15 2.99 16 23 O -0.49 -17.02 11.15 -78.86 -0.88 -17.90 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 27 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 28 H 0.37 15.22 8.58 -213.32 -1.83 13.39 16 29 H 0.13 3.38 8.02 -2.91 -0.02 3.36 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.41 2.73 9.06 -74.06 -0.67 2.06 16 33 H 0.40 6.48 9.07 -74.06 -0.67 5.81 16 34 H 0.39 12.65 9.06 -74.06 -0.67 11.98 16 Total: -1.00 -70.77 304.68 -1.57 -72.34 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -2.66 Total: 30.00 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.21 Total: -15.36 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -1.30 Total: -90.60 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -2.85 Total: -40.93 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -70.77 -1.57 -72.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.435 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds