Wall clock time and date at job start Mon Mar 30 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35470 * 117.00468 * 180.02562 * 3 2 1 5 5 C 1.39660 * 119.97855 * 179.72035 * 4 3 2 6 6 N 1.31509 * 120.04065 * 179.74830 * 5 4 3 7 7 C 1.33245 * 119.98972 * 0.52812 * 6 5 4 8 8 C 1.47793 * 120.02707 * 179.70756 * 7 6 5 9 9 O 1.21460 * 119.99680 * 180.02562 * 8 7 6 10 10 O 1.34711 * 119.99948 * 0.02562 * 8 7 6 11 11 C 1.45196 * 116.99863 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47456 * 329.99569 * 11 10 8 13 13 C 1.52998 * 109.47535 * 89.99642 * 11 10 8 14 14 C 1.50707 * 109.47135 * 209.99532 * 11 10 8 15 15 H 1.07994 * 119.99381 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99852 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00058 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99835 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47091 * 89.99860 * 18 16 14 20 20 H 1.48498 * 109.47099 * 210.00431 * 18 16 14 21 21 H 1.48508 * 109.46920 * 330.00437 * 18 16 14 22 22 C 1.39434 * 119.94692 * 359.72676 * 7 6 5 23 23 N 1.32075 * 119.95398 * 0.02562 * 22 7 6 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 29 29 H 1.07995 * 119.97489 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.47452 * 59.99925 * 13 11 10 31 31 H 1.09001 * 109.47379 * 180.02562 * 13 11 10 32 32 H 1.09006 * 109.47112 * 299.99942 * 13 11 10 33 33 H 0.97001 * 119.99617 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.02236 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3494 1.5248 -0.0005 5 6 3.8826 2.8156 -0.0065 6 7 5.1862 2.9894 -0.0020 7 6 5.9989 1.9335 -0.0024 8 6 7.4640 2.1279 -0.0040 9 8 8.2043 1.1650 -0.0048 10 8 7.9782 3.3730 -0.0044 11 6 9.4256 3.4883 -0.0064 12 1 9.8593 2.6299 0.5066 13 6 9.9320 3.5291 -1.4496 14 6 9.8296 4.7547 0.7036 15 1 9.0741 5.4076 1.1149 16 6 11.1637 5.0796 0.8282 17 7 12.0837 4.2846 0.3269 18 14 11.6646 6.6489 1.7090 19 1 11.8542 6.3664 3.1545 20 1 12.9358 7.1559 1.1327 21 1 10.6016 7.6722 1.5400 22 6 5.4660 0.6450 -0.0019 23 7 4.1565 0.4729 -0.0014 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2240 3.6715 -0.0102 30 1 9.4984 4.3875 -1.9627 31 1 11.0186 3.6153 -1.4511 32 1 9.6398 2.6132 -1.9633 33 1 13.0223 4.5130 0.4149 34 1 6.1236 -0.2117 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778639380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:29 Heat of formation + Delta-G solvation = -77.337217 kcal Electronic energy + Delta-G solvation = -19367.001617 eV Core-core repulsion = 16072.996817 eV Total energy + Delta-G solvation = -3294.004800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51104 -39.52545 -38.58881 -35.79599 -34.38210 -33.21937 -32.51003 -30.71618 -29.46389 -25.61377 -25.32399 -24.96880 -23.03931 -22.03637 -20.10947 -18.88354 -18.22144 -17.47921 -16.79819 -16.39077 -15.93927 -15.34424 -15.04858 -14.90221 -14.43680 -14.38505 -13.78653 -13.04923 -13.00451 -12.88940 -12.20777 -12.15634 -11.89479 -11.64191 -11.46282 -11.22339 -11.08878 -11.04964 -10.85107 -10.36221 -10.29895 -10.13503 -9.56662 -9.36047 -8.95267 -8.89426 -8.48015 -6.17108 -4.23445 0.34966 0.88538 2.48620 2.80641 3.25436 3.28139 3.33323 3.40961 3.74852 3.78067 4.11745 4.26607 4.38038 4.62389 4.64941 4.93418 5.00032 5.15967 5.19118 5.37154 5.43830 5.51682 5.63807 5.90380 6.60480 6.71722 6.87809 6.89377 6.92459 7.10056 7.46871 7.58664 7.71141 7.89653 8.13275 8.55113 8.87528 9.41606 10.90509 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044476 B = 0.003624 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.406846 B = 7725.361845 C = 8119.399505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.294 6.294 4 C 0.294 3.706 5 C 0.043 3.957 6 N -0.348 5.348 7 C 0.009 3.991 8 C 0.518 3.482 9 O -0.509 6.509 10 O -0.329 6.329 11 C 0.213 3.787 12 H 0.049 0.951 13 C -0.155 4.155 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.913 3.087 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.156 3.844 23 N -0.504 5.504 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.184 0.816 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 -7.339 -1.286 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.199 6.199 4 C 0.110 3.890 5 C -0.124 4.124 6 N -0.065 5.065 7 C -0.128 4.128 8 C 0.360 3.640 9 O -0.399 6.399 10 O -0.243 6.243 11 C 0.160 3.840 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.740 3.260 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.002 4.002 23 N -0.233 5.233 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.201 0.799 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -19.312 -7.432 -1.308 20.734 hybrid contribution 0.455 0.419 0.394 0.733 sum -18.857 -7.013 -0.914 20.140 Atomic orbital electron populations 1.21826 0.92584 1.03112 1.03517 1.22765 0.95130 0.80604 1.02995 1.86238 1.15832 1.31323 1.86516 1.21367 0.85096 0.91904 0.90647 1.23135 0.91712 0.95011 1.02561 1.68610 1.02617 1.32326 1.02957 1.21313 0.93796 0.90816 1.06911 1.20190 0.86444 0.83656 0.73708 1.90807 1.60016 1.42195 1.46911 1.86670 1.30587 1.26628 1.80393 1.20769 0.69333 0.98906 0.94953 0.93359 1.22173 1.05079 0.97627 0.96404 1.21028 0.92359 1.05986 1.36328 0.91117 1.24884 0.95823 0.97692 0.95593 1.69898 1.00952 1.37177 1.44789 0.86254 0.77990 0.82314 0.79475 1.20417 1.20964 1.19520 1.23535 0.89897 0.97538 0.89229 1.68265 1.05067 1.32412 1.17560 0.90099 0.91469 0.91472 0.91178 0.91170 0.79875 0.94260 0.88096 0.96475 0.92398 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.49 6.04 37.16 0.22 0.71 16 3 O -0.29 -3.09 10.12 -18.10 -0.18 -3.27 16 4 C 0.29 3.64 7.51 -16.69 -0.13 3.51 16 5 C 0.04 0.56 11.18 -17.16 -0.19 0.37 16 6 N -0.35 -5.83 10.27 -9.50 -0.10 -5.93 16 7 C 0.01 0.15 6.74 -82.90 -0.56 -0.41 16 8 C 0.52 11.26 7.92 34.64 0.27 11.54 16 9 O -0.51 -11.71 15.59 -19.23 -0.30 -12.01 16 10 O -0.33 -8.16 9.69 -40.52 -0.39 -8.56 16 11 C 0.21 5.79 2.56 -27.88 -0.07 5.72 16 12 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 13 C -0.16 -3.97 9.33 37.16 0.35 -3.62 16 14 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 18 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.16 2.25 10.76 -17.00 -0.18 2.07 16 23 N -0.50 -6.63 9.37 -12.74 -0.12 -6.75 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 28 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.19 2.39 7.63 -52.49 -0.40 1.99 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -31.43 305.71 -5.19 -36.62 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.01 Total: -2.19 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.30 Total: 5.95 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.41 Total: -37.41 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.88 Total: -23.84 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.43 -5.19 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778639380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.716 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds