Wall clock time and date at job start Mon Mar 30 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35470 * 117.00468 * 180.02562 * 3 2 1 5 5 C 1.39660 * 119.97855 * 179.72035 * 4 3 2 6 6 N 1.31509 * 120.04065 * 179.74830 * 5 4 3 7 7 C 1.33245 * 119.98972 * 0.52812 * 6 5 4 8 8 C 1.47793 * 120.02707 * 179.70756 * 7 6 5 9 9 O 1.21460 * 119.99680 * 180.02562 * 8 7 6 10 10 O 1.34711 * 119.99948 * 0.02562 * 8 7 6 11 11 C 1.45196 * 116.99863 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47456 * 329.99569 * 11 10 8 13 13 C 1.52998 * 109.47535 * 89.99642 * 11 10 8 14 14 C 1.50707 * 109.47135 * 209.99532 * 11 10 8 15 15 H 1.07994 * 119.99381 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99852 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00058 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99835 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47091 * 89.99860 * 18 16 14 20 20 H 1.48498 * 109.47099 * 210.00431 * 18 16 14 21 21 H 1.48508 * 109.46920 * 330.00437 * 18 16 14 22 22 C 1.39434 * 119.94692 * 359.72676 * 7 6 5 23 23 N 1.32075 * 119.95398 * 0.02562 * 22 7 6 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 29 29 H 1.07995 * 119.97489 * 0.02562 * 5 4 3 30 30 H 1.08999 * 109.47452 * 59.99925 * 13 11 10 31 31 H 1.09001 * 109.47379 * 180.02562 * 13 11 10 32 32 H 1.09006 * 109.47112 * 299.99942 * 13 11 10 33 33 H 0.97001 * 119.99617 * 180.02562 * 17 16 14 34 34 H 1.07996 * 120.02236 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3494 1.5248 -0.0005 5 6 3.8826 2.8156 -0.0065 6 7 5.1862 2.9894 -0.0020 7 6 5.9989 1.9335 -0.0024 8 6 7.4640 2.1279 -0.0040 9 8 8.2043 1.1650 -0.0048 10 8 7.9782 3.3730 -0.0044 11 6 9.4256 3.4883 -0.0064 12 1 9.8593 2.6299 0.5066 13 6 9.9320 3.5291 -1.4496 14 6 9.8296 4.7547 0.7036 15 1 9.0741 5.4076 1.1149 16 6 11.1637 5.0796 0.8282 17 7 12.0837 4.2846 0.3269 18 14 11.6646 6.6489 1.7090 19 1 11.8542 6.3664 3.1545 20 1 12.9358 7.1559 1.1327 21 1 10.6016 7.6722 1.5400 22 6 5.4660 0.6450 -0.0019 23 7 4.1565 0.4729 -0.0014 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2240 3.6715 -0.0102 30 1 9.4984 4.3875 -1.9627 31 1 11.0186 3.6153 -1.4511 32 1 9.6398 2.6132 -1.9633 33 1 13.0223 4.5130 0.4149 34 1 6.1236 -0.2117 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778639380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:29 Heat of formation + Delta-G solvation = -99.407662 kcal Electronic energy + Delta-G solvation = -19367.958664 eV Core-core repulsion = 16072.996817 eV Total energy + Delta-G solvation = -3294.961846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65187 -41.14195 -39.67168 -37.66302 -35.59843 -35.22029 -33.32806 -31.96267 -31.28244 -27.47043 -26.74023 -26.17821 -23.94676 -23.55674 -21.91271 -19.83267 -19.60627 -19.06804 -18.20912 -17.77417 -17.68411 -16.93186 -16.60731 -16.07815 -15.77189 -15.50808 -15.06754 -14.57384 -14.26561 -13.92895 -13.67816 -13.49779 -13.21296 -13.07708 -12.98910 -12.83301 -12.50077 -12.43385 -12.38464 -12.16207 -11.86383 -11.82492 -11.61371 -11.01303 -10.60831 -10.53508 -10.02914 -8.28736 -6.45176 -0.85730 -0.21195 1.30322 1.41517 1.44648 1.49978 1.57421 1.81796 2.39039 2.47723 2.74491 2.94681 3.02020 3.17073 3.73909 3.91707 4.05995 4.15227 4.37423 4.42407 4.49748 4.60194 4.78096 4.81024 4.94335 4.95391 5.09907 5.23339 5.46335 5.59840 5.76177 5.79813 5.89012 6.03002 6.34697 6.57961 6.85089 7.25557 8.79167 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044476 B = 0.003624 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.406846 B = 7725.361845 C = 8119.399505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.288 6.288 4 C 0.311 3.689 5 C 0.055 3.945 6 N -0.378 5.378 7 C -0.022 4.022 8 C 0.515 3.485 9 O -0.532 6.532 10 O -0.342 6.342 11 C 0.215 3.785 12 H 0.015 0.985 13 C -0.142 4.142 14 C -0.549 4.549 15 H 0.065 0.935 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.983 3.017 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.264 1.264 22 C 0.174 3.826 23 N -0.503 5.503 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.026 0.974 33 H 0.272 0.728 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.789 -7.007 -1.045 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.191 6.191 4 C 0.126 3.874 5 C -0.115 4.115 6 N -0.095 5.095 7 C -0.157 4.157 8 C 0.359 3.641 9 O -0.423 6.423 10 O -0.257 6.257 11 C 0.162 3.838 12 H 0.032 0.968 13 C -0.200 4.200 14 C -0.586 4.586 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.553 5.553 18 Si 0.806 3.194 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.189 1.189 22 C 0.016 3.984 23 N -0.233 5.233 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.236 0.764 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -21.512 -7.135 -1.074 22.690 hybrid contribution 0.881 0.205 0.311 0.957 sum -20.631 -6.930 -0.763 21.777 Atomic orbital electron populations 1.21850 0.90357 1.04525 1.03748 1.23091 0.96852 0.79231 1.03178 1.86281 1.14325 1.33102 1.85412 1.21538 0.85883 0.91685 0.88301 1.23655 0.90601 0.96443 1.00778 1.68476 1.04288 1.32685 1.04058 1.20783 0.91301 0.92345 1.11255 1.20885 0.88389 0.82303 0.72512 1.90772 1.61242 1.42297 1.47989 1.86648 1.29009 1.28743 1.81328 1.20494 0.70864 0.97260 0.95209 0.96764 1.21995 1.03869 0.98301 0.95839 1.21270 0.93040 1.06632 1.37689 0.91691 1.25814 0.95421 1.01063 0.95916 1.70006 1.01432 1.38761 1.45136 0.85174 0.77912 0.77963 0.78311 1.19675 1.19815 1.18858 1.23594 0.90498 0.96542 0.87723 1.68380 1.04292 1.32557 1.18079 0.88112 0.91257 0.91210 0.90975 0.91036 0.76401 0.93719 0.89708 0.95481 0.91884 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.05 0.68 6.04 71.98 0.43 1.12 16 3 O -0.29 -5.14 10.12 -87.69 -0.89 -6.03 16 4 C 0.31 6.93 7.51 84.92 0.64 7.57 16 5 C 0.05 1.29 11.18 85.08 0.95 2.24 16 6 N -0.38 -12.45 10.27 -183.97 -1.89 -14.34 16 7 C -0.02 -0.78 6.74 41.75 0.28 -0.50 16 8 C 0.52 23.20 7.92 70.35 0.56 23.75 16 9 O -0.53 -25.48 15.59 19.96 0.31 -25.16 16 10 O -0.34 -17.66 9.69 -56.21 -0.54 -18.21 16 11 C 0.21 12.15 2.56 29.85 0.08 12.23 16 12 H 0.01 0.90 7.16 -2.39 -0.02 0.88 16 13 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 14 C -0.55 -32.04 8.90 25.60 0.23 -31.82 16 15 H 0.06 3.76 7.81 -2.91 -0.02 3.74 16 16 C 0.02 0.99 5.30 84.65 0.45 1.44 16 17 N -0.92 -52.91 11.32 21.45 0.24 -52.66 16 18 Si 0.98 43.54 29.54 68.60 2.03 45.57 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 C 0.17 4.89 10.76 84.94 0.91 5.80 16 23 N -0.50 -12.31 9.37 -307.04 -2.88 -15.19 16 24 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 28 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 29 H 0.22 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.04 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.08 4.73 6.07 -2.39 -0.01 4.72 16 32 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 34 H 0.20 5.00 7.63 -2.91 -0.02 4.97 16 Total: -1.00 -68.93 305.71 3.44 -65.49 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.11 Total: 5.96 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 5.94 Total: 14.57 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -4.52 Total: -82.19 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.12 Total: -49.40 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.93 3.44 -65.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778639380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.917 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds