Wall clock time and date at job start Mon Mar 30 2020 04:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47343 * 2 1 4 4 H 1.09005 * 109.47155 * 54.99686 * 3 2 1 5 5 C 1.50697 * 109.47210 * 174.99703 * 3 2 1 6 6 H 1.08006 * 119.99596 * 119.99906 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00102 * 5 3 2 8 8 N 1.31507 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99994 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46935 * 119.99899 * 9 7 5 12 12 H 1.48500 * 109.46913 * 239.99965 * 9 7 5 13 13 O 1.45198 * 109.46983 * 294.99915 * 3 2 1 14 14 C 1.34737 * 117.00142 * 90.00030 * 13 3 2 15 15 O 1.21509 * 120.00077 * 359.97438 * 14 13 3 16 16 C 1.47490 * 120.00189 * 179.97438 * 14 13 3 17 17 C 1.40119 * 120.88702 * 179.97438 * 16 14 13 18 18 N 1.31998 * 118.98140 * 179.72572 * 17 16 14 19 19 C 1.32485 * 120.92134 * 0.27888 * 18 17 16 20 20 O 1.35282 * 119.01453 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99947 * 180.02562 * 20 19 18 22 22 N 1.32475 * 121.96929 * 0.02562 * 19 18 17 23 23 C 1.32001 * 120.92153 * 359.97326 * 22 19 18 24 24 H 1.08998 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46811 * 300.00132 * 1 2 3 26 26 H 1.09002 * 109.47181 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.47178 * 239.99471 * 2 1 3 28 28 H 1.09002 * 109.47181 * 120.00216 * 2 1 3 29 29 H 0.97003 * 120.00598 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.51328 * 0.02562 * 17 16 14 31 31 H 1.08998 * 109.46703 * 300.00212 * 21 20 19 32 32 H 1.08999 * 109.46898 * 59.99469 * 21 20 19 33 33 H 1.08995 * 109.47163 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.50791 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5441 0.1931 11 1 6.4000 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4683 2.7278 -1.2561 15 8 -0.2276 2.7395 -0.2601 16 6 0.0130 3.4101 -2.4818 17 6 -1.2188 4.0769 -2.5186 18 7 -1.5868 4.6796 -3.6338 19 6 -0.8123 4.6550 -4.7084 20 8 -1.2277 5.2853 -5.8311 21 6 -0.3591 5.2310 -6.9646 22 7 0.3562 4.0309 -4.7167 23 6 0.7978 3.4036 -3.6426 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0604 2.9504 30 1 -1.8553 4.1014 -1.6464 31 1 0.5984 5.6857 -6.7106 32 1 -0.2026 4.1916 -7.2530 33 1 -0.8104 5.7748 -7.7945 34 1 1.7513 2.8966 -3.6569 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787087068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:24 Heat of formation + Delta-G solvation = -72.916128 kcal Electronic energy + Delta-G solvation = -19889.564528 eV Core-core repulsion = 16595.751441 eV Total energy + Delta-G solvation = -3293.813087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42854 -39.60412 -38.38999 -35.89644 -34.11568 -33.55200 -31.88493 -31.25406 -28.01860 -27.29825 -24.84600 -24.60628 -23.18457 -21.30965 -19.73690 -19.01746 -18.21839 -17.46177 -16.65799 -16.47144 -15.80515 -15.39947 -15.11382 -14.74755 -14.53459 -14.04984 -13.64485 -13.20681 -12.91117 -12.39398 -12.26829 -11.94691 -11.59762 -11.46963 -11.35281 -11.24138 -11.10996 -11.02219 -10.70968 -10.33476 -9.91447 -9.76571 -9.48423 -9.39396 -9.20618 -8.87825 -8.51636 -6.24214 -4.31684 0.44433 0.89794 2.31107 2.94466 3.20161 3.26399 3.30381 3.45467 3.75629 3.81278 4.27920 4.40040 4.51560 4.80158 4.98210 5.01603 5.08201 5.29980 5.50599 5.70046 5.91776 6.17881 6.24297 6.38112 6.47247 6.78904 6.86818 6.90316 7.09909 7.14896 7.54731 7.66503 7.80918 7.84544 8.07887 8.48525 8.79308 9.33850 10.82554 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.004532 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.101070 B = 6176.490256 C = 6801.362771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.350 6.350 14 C 0.511 3.489 15 O -0.507 6.507 16 C -0.259 4.259 17 C 0.247 3.753 18 N -0.530 5.530 19 C 0.512 3.488 20 O -0.287 6.287 21 C 0.042 3.958 22 N -0.574 5.574 23 C 0.245 3.755 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.266 0.734 30 H 0.192 0.808 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 5.607 -12.878 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.354 3.646 15 O -0.398 6.398 16 C -0.266 4.266 17 C 0.081 3.919 18 N -0.255 5.255 19 C 0.211 3.789 20 O -0.188 6.188 21 C -0.053 4.053 22 N -0.304 5.304 23 C 0.079 3.921 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.208 0.792 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.396 6.147 -13.397 16.068 hybrid contribution 1.367 -0.606 0.888 1.738 sum -5.029 5.541 -12.510 14.577 Atomic orbital electron populations 1.21867 0.98329 0.99141 1.00743 1.22037 0.92676 0.99229 1.03511 1.20767 0.95136 0.88770 0.78237 0.93230 1.21060 0.89498 1.39144 1.06376 0.91186 1.24874 0.99263 0.94684 0.95031 1.69888 1.35365 1.37723 1.09440 0.86233 0.83822 0.77917 0.78260 1.19466 1.20738 1.20695 1.86508 1.33186 1.62327 1.44605 1.20220 0.81346 0.76795 0.86269 1.90810 1.55521 1.58726 1.34764 1.21084 0.99992 1.08781 0.96726 1.23398 0.91192 0.83502 0.93849 1.67747 1.34691 1.24029 0.99006 1.21017 0.85052 0.86022 0.86834 1.86053 1.46068 1.68050 1.18584 1.23057 0.94331 1.03385 0.84543 1.68170 1.15377 1.15207 1.31618 1.23548 0.97651 0.86267 0.84656 0.94730 0.92692 0.95030 0.93868 0.87208 0.92357 0.79153 0.91572 0.91578 0.87770 0.79142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16 3 C 0.22 5.61 2.25 -27.88 -0.06 5.55 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -13.95 8.90 -34.44 -0.31 -14.25 16 6 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.21 11.29 55.43 0.63 -23.59 16 9 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 O -0.35 -7.65 9.15 -40.59 -0.37 -8.03 16 14 C 0.51 9.96 6.36 34.50 0.22 10.18 16 15 O -0.51 -10.88 13.62 -19.27 -0.26 -11.15 16 16 C -0.26 -4.05 5.90 -104.72 -0.62 -4.67 16 17 C 0.25 3.52 10.87 -16.77 -0.18 3.34 16 18 N -0.53 -7.84 10.45 -14.38 -0.15 -7.99 16 19 C 0.51 7.28 8.48 -90.97 -0.77 6.50 16 20 O -0.29 -3.58 10.55 -17.54 -0.18 -3.76 16 21 C 0.04 0.35 10.35 101.05 1.05 1.39 16 22 N -0.57 -7.89 9.19 -14.38 -0.13 -8.02 16 23 C 0.24 3.44 10.90 -16.78 -0.18 3.25 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 26 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.19 2.37 7.74 -52.49 -0.41 1.97 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.19 2.41 7.71 -52.48 -0.40 2.00 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -29.74 297.58 -5.66 -35.40 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.86 Total: 0.49 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.78 Total: 6.82 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.34 Total: -39.59 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.82 Total: -22.94 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.74 -5.66 -35.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.521 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds