Wall clock time and date at job start Mon Mar 30 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47343 * 2 1 4 4 H 1.09005 * 109.47155 * 54.99686 * 3 2 1 5 5 C 1.50697 * 109.47210 * 174.99703 * 3 2 1 6 6 H 1.08006 * 119.99596 * 119.99906 * 5 3 2 7 7 C 1.37875 * 120.00221 * 300.00102 * 5 3 2 8 8 N 1.31507 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99994 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46869 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46935 * 119.99899 * 9 7 5 12 12 H 1.48500 * 109.46913 * 239.99965 * 9 7 5 13 13 O 1.45198 * 109.46983 * 294.99915 * 3 2 1 14 14 C 1.34737 * 117.00142 * 90.00030 * 13 3 2 15 15 O 1.21509 * 120.00077 * 359.97438 * 14 13 3 16 16 C 1.47490 * 120.00189 * 179.97438 * 14 13 3 17 17 C 1.40119 * 120.88702 * 179.97438 * 16 14 13 18 18 N 1.31998 * 118.98140 * 179.72572 * 17 16 14 19 19 C 1.32485 * 120.92134 * 0.27888 * 18 17 16 20 20 O 1.35282 * 119.01453 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99947 * 180.02562 * 20 19 18 22 22 N 1.32475 * 121.96929 * 0.02562 * 19 18 17 23 23 C 1.32001 * 120.92153 * 359.97326 * 22 19 18 24 24 H 1.08998 * 109.47334 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46811 * 300.00132 * 1 2 3 26 26 H 1.09002 * 109.47181 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.47178 * 239.99471 * 2 1 3 28 28 H 1.09002 * 109.47181 * 120.00216 * 2 1 3 29 29 H 0.97003 * 120.00598 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.51328 * 0.02562 * 17 16 14 31 31 H 1.08998 * 109.46703 * 300.00212 * 21 20 19 32 32 H 1.08999 * 109.46898 * 59.99469 * 21 20 19 33 33 H 1.08995 * 109.47163 * 180.02562 * 21 20 19 34 34 H 1.08006 * 120.50791 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5441 0.1931 11 1 6.4000 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4683 2.7278 -1.2561 15 8 -0.2276 2.7395 -0.2601 16 6 0.0130 3.4101 -2.4818 17 6 -1.2188 4.0769 -2.5186 18 7 -1.5868 4.6796 -3.6338 19 6 -0.8123 4.6550 -4.7084 20 8 -1.2277 5.2853 -5.8311 21 6 -0.3591 5.2310 -6.9646 22 7 0.3562 4.0309 -4.7167 23 6 0.7978 3.4036 -3.6426 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0604 2.9504 30 1 -1.8553 4.1014 -1.6464 31 1 0.5984 5.6857 -6.7106 32 1 -0.2026 4.1916 -7.2530 33 1 -0.8104 5.7748 -7.7945 34 1 1.7513 2.8966 -3.6569 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:23 Heat of formation + Delta-G solvation = -93.484980 kcal Electronic energy + Delta-G solvation = -19890.456461 eV Core-core repulsion = 16595.751441 eV Total energy + Delta-G solvation = -3294.705020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57303 -41.16765 -39.44590 -37.61824 -35.56750 -35.12277 -33.47278 -32.77943 -29.38319 -28.66634 -26.10176 -25.80476 -24.94743 -22.86295 -21.52040 -20.01647 -19.51032 -19.08093 -18.18754 -17.65822 -17.54898 -17.01376 -16.45462 -16.16855 -15.59641 -15.14456 -14.93593 -14.75435 -14.67014 -14.03261 -13.50993 -13.32396 -13.10547 -13.03546 -12.92456 -12.81416 -12.51512 -12.41810 -12.20274 -12.11299 -11.72773 -11.48381 -11.32504 -10.80316 -10.53260 -10.50913 -10.33979 -8.24739 -6.40733 -0.75567 -0.21505 1.33896 1.44773 1.45263 1.50496 1.58351 1.88836 2.42678 2.53252 2.72916 3.05854 3.26308 3.47727 3.63971 3.96394 4.37682 4.38797 4.41945 4.43618 4.58300 4.60140 4.68949 4.83724 4.87675 5.12409 5.24315 5.32835 5.43945 5.54797 5.70463 5.82620 5.97725 6.12293 6.62422 6.70669 6.92164 7.30102 8.82076 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.004532 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.101070 B = 6176.490256 C = 6801.362771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.012 0.988 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.274 1.274 13 O -0.353 6.353 14 C 0.513 3.487 15 O -0.532 6.532 16 C -0.274 4.274 17 C 0.260 3.740 18 N -0.543 5.543 19 C 0.512 3.488 20 O -0.294 6.294 21 C 0.035 3.965 22 N -0.570 5.570 23 C 0.256 3.744 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.270 0.730 30 H 0.205 0.795 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 5.924 -14.583 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.030 0.970 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.199 1.199 13 O -0.269 6.269 14 C 0.357 3.643 15 O -0.424 6.424 16 C -0.280 4.280 17 C 0.094 3.906 18 N -0.268 5.268 19 C 0.212 3.788 20 O -0.194 6.194 21 C -0.060 4.060 22 N -0.300 5.300 23 C 0.090 3.910 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.222 0.778 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.055 6.482 -15.145 17.551 hybrid contribution 1.184 -0.619 1.298 1.863 sum -4.871 5.863 -13.847 15.806 Atomic orbital electron populations 1.21726 0.96294 1.00608 1.00222 1.21888 0.94454 0.98062 1.02507 1.20445 0.94554 0.89265 0.78318 0.96978 1.21362 0.90443 1.39762 1.06878 0.91250 1.25734 1.03867 0.93993 0.94476 1.70008 1.37261 1.38032 1.09863 0.85210 0.78152 0.78180 0.78331 1.18687 1.20456 1.19921 1.86480 1.34690 1.62867 1.42868 1.20736 0.80194 0.76072 0.87252 1.90798 1.55877 1.59616 1.36061 1.20784 1.01235 1.10419 0.95609 1.23588 0.90613 0.82259 0.94179 1.67832 1.35060 1.24605 0.99341 1.21310 0.84880 0.85388 0.87268 1.86084 1.47146 1.67305 1.18861 1.23421 0.94428 1.04274 0.83855 1.68276 1.15270 1.15352 1.31092 1.23736 0.97674 0.85471 0.84091 0.92195 0.94283 0.94399 0.93338 0.89548 0.92103 0.77817 0.91334 0.91243 0.84458 0.77881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.56 71.98 0.62 -4.86 16 2 C -0.13 -6.28 5.49 30.59 0.17 -6.12 16 3 C 0.23 11.69 2.25 29.85 0.07 11.76 16 4 H 0.01 0.72 7.16 -2.38 -0.02 0.70 16 5 C -0.55 -29.53 8.90 25.60 0.23 -29.30 16 6 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.66 11.29 21.45 0.24 -50.42 16 9 Si 0.98 41.52 29.54 68.60 2.03 43.55 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 O -0.35 -15.56 9.15 -56.47 -0.52 -16.07 16 14 C 0.51 20.06 6.36 70.26 0.45 20.51 16 15 O -0.53 -23.18 13.62 19.81 0.27 -22.91 16 16 C -0.27 -8.33 5.90 -19.93 -0.12 -8.45 16 17 C 0.26 7.14 10.87 85.12 0.93 8.07 16 18 N -0.54 -15.26 10.45 -312.36 -3.26 -18.52 16 19 C 0.51 13.62 8.48 180.47 1.53 15.16 16 20 O -0.29 -6.68 10.55 -85.67 -0.90 -7.59 16 21 C 0.03 0.47 10.35 113.37 1.17 1.65 16 22 N -0.57 -14.59 9.19 -312.36 -2.87 -17.45 16 23 C 0.26 6.84 10.90 85.12 0.93 7.76 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.72 7.79 -2.39 -0.02 1.71 16 26 H 0.04 1.50 6.06 -2.39 -0.01 1.49 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 4.57 5.95 -2.39 -0.01 4.56 16 29 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.21 4.90 7.74 -2.91 -0.02 4.87 16 31 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.20 4.83 7.71 -2.91 -0.02 4.81 16 Total: -1.00 -63.71 297.58 2.52 -61.19 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.12 Total: 10.58 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.41 Total: 17.65 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -5.89 Total: -86.40 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.15 Total: -46.57 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -63.71 2.52 -61.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.293 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds