Wall clock time and date at job start Mon Mar 30 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46922 * 2 1 4 4 H 1.08996 * 109.47066 * 305.59051 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58085 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58546 * 3 2 1 14 14 C 1.34686 * 117.00023 * 270.00185 * 13 3 2 15 15 O 1.21438 * 119.99950 * 359.97438 * 14 13 3 16 16 C 1.48030 * 120.00108 * 180.02562 * 14 13 3 17 17 C 1.39316 * 120.06187 * 179.97438 * 16 14 13 18 18 N 1.32158 * 120.01821 * 180.02562 * 17 16 14 19 19 C 1.31981 * 120.14130 * 359.97410 * 18 17 16 20 20 C 1.39471 * 120.12266 * 0.02562 * 19 18 17 21 21 O 1.35678 * 120.00474 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99537 * 180.02562 * 21 20 19 23 23 N 1.32166 * 119.98445 * 359.70058 * 20 19 18 24 24 H 1.09008 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47118 * 60.00374 * 1 2 3 26 26 H 1.08996 * 109.47406 * 299.99819 * 1 2 3 27 27 H 1.09001 * 109.47118 * 119.99626 * 2 1 3 28 28 H 1.08996 * 109.47406 * 240.00181 * 2 1 3 29 29 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.99159 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.94033 * 180.02562 * 19 18 17 32 32 H 1.08994 * 109.47165 * 60.00082 * 22 21 20 33 33 H 1.09003 * 109.46878 * 179.97438 * 22 21 20 34 34 H 1.09001 * 109.47262 * 300.00020 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5405 1.4449 -0.1382 6 1 4.1637 1.3341 0.7369 7 6 4.1180 1.5884 -1.3820 8 7 5.4231 1.4953 -1.5157 9 14 3.0468 1.9153 -2.8770 10 1 2.7808 3.3721 -2.9864 11 1 3.7473 1.4468 -4.0998 12 1 1.7609 1.1868 -2.7334 13 8 1.6677 2.0875 1.2466 14 6 0.4807 2.7232 1.2756 15 8 -0.2239 2.7389 0.2866 16 6 0.0355 3.4037 2.5125 17 6 -1.1918 4.0622 2.5436 18 7 -1.5882 4.6699 3.6482 19 6 -0.8238 4.6545 4.7240 20 6 0.4061 3.9971 4.6993 21 8 1.1903 3.9831 5.8064 22 6 2.4370 3.2914 5.7095 23 7 0.8049 3.3831 3.5989 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 5.8293 1.5960 -2.3908 30 1 -1.8192 4.0767 1.6646 31 1 -1.1511 5.1518 5.6251 32 1 3.0442 3.7449 4.9262 33 1 2.9640 3.3575 6.6614 34 1 2.2538 2.2446 5.4671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791891043.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:15 Heat of formation + Delta-G solvation = -73.689641 kcal Electronic energy + Delta-G solvation = -20242.016486 eV Core-core repulsion = 16948.169856 eV Total energy + Delta-G solvation = -3293.846629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51431 -39.71360 -38.45551 -36.08732 -34.43030 -33.36394 -32.05196 -31.29421 -28.03723 -27.67483 -25.72793 -23.93024 -23.03572 -21.70083 -19.90270 -18.57933 -18.42280 -17.18933 -16.98036 -16.51146 -16.36039 -15.95393 -15.59869 -14.68662 -14.43455 -14.11379 -13.50559 -13.19217 -12.86518 -12.55109 -12.23262 -12.16123 -11.77323 -11.76077 -11.65122 -11.48446 -11.05801 -11.03549 -10.85143 -10.50571 -10.17906 -9.94183 -9.50432 -9.38494 -9.13651 -8.95012 -8.75473 -6.32783 -4.36959 0.22488 0.91522 2.69643 2.72740 3.00799 3.19587 3.25558 3.30355 3.65728 3.87420 4.12869 4.21458 4.25565 4.94982 4.97019 5.12166 5.23527 5.30551 5.38841 5.60549 5.84088 5.85439 5.92037 5.97808 6.32857 6.56593 6.70878 6.72120 6.80333 6.89527 7.09255 7.21688 7.42398 7.44861 8.11380 8.47381 8.78195 9.25692 10.78294 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.005874 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.212400 B = 4765.443573 C = 5324.159673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.185 3.815 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.086 0.914 7 C 0.083 3.917 8 N -0.879 5.879 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.258 1.258 13 O -0.319 6.319 14 C 0.510 3.490 15 O -0.502 6.502 16 C 0.101 3.899 17 C 0.063 3.937 18 N -0.407 5.407 19 C 0.064 3.936 20 C 0.271 3.729 21 O -0.300 6.300 22 C 0.033 3.967 23 N -0.445 5.445 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.271 0.729 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 3.736 11.308 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.132 3.868 4 H 0.067 0.933 5 C -0.555 4.555 6 H 0.104 0.896 7 C -0.122 4.122 8 N -0.515 5.515 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.182 1.182 13 O -0.233 6.233 14 C 0.352 3.648 15 O -0.391 6.391 16 C -0.038 4.038 17 C -0.095 4.095 18 N -0.121 5.121 19 C -0.101 4.101 20 C 0.086 3.914 21 O -0.205 6.205 22 C -0.062 4.062 23 N -0.178 5.178 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.205 0.795 31 H 0.200 0.800 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.356 3.784 11.073 15.626 hybrid contribution -0.111 0.001 -1.023 1.029 sum -10.467 3.785 10.050 14.996 Atomic orbital electron populations 1.21941 0.97490 1.00003 1.01448 1.22104 0.93582 0.98693 1.02550 1.21190 0.96366 0.88977 0.80247 0.93273 1.20771 0.87674 1.51301 0.95772 0.89559 1.24911 0.94990 0.93640 0.98610 1.69852 1.09505 1.47426 1.24740 0.86988 0.81324 0.79935 0.82476 1.19530 1.20627 1.18237 1.86853 1.32164 1.61075 1.43233 1.20483 0.81770 0.77008 0.85578 1.90811 1.55285 1.58684 1.34368 1.21322 0.92648 0.98014 0.91817 1.23656 0.94368 0.93756 0.97674 1.68645 1.30768 1.14078 0.98570 1.23234 0.89356 0.98615 0.98848 1.21041 0.90895 0.92858 0.86652 1.86249 1.31959 1.71753 1.30532 1.23043 0.82134 0.97432 1.03575 1.68178 1.33390 1.17246 0.98940 0.93877 0.92595 0.94074 0.91822 0.90809 0.91899 0.79522 0.80018 0.91400 0.88111 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.57 37.16 0.32 -2.55 16 2 C -0.13 -2.84 5.63 -26.73 -0.15 -2.99 16 3 C 0.18 4.53 1.91 -27.88 -0.05 4.48 16 4 H 0.05 1.25 4.31 -51.93 -0.22 1.03 16 5 C -0.52 -14.47 9.25 -34.44 -0.32 -14.79 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 8 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 9 Si 0.87 20.98 26.99 -169.99 -4.59 16.39 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.26 -6.03 6.82 56.52 0.39 -5.64 16 13 O -0.32 -7.40 9.64 -40.45 -0.39 -7.79 16 14 C 0.51 10.35 6.43 34.75 0.22 10.57 16 15 O -0.50 -10.50 13.52 -19.22 -0.26 -10.76 16 16 C 0.10 1.71 6.75 -82.88 -0.56 1.15 16 17 C 0.06 0.89 10.76 -17.01 -0.18 0.71 16 18 N -0.41 -5.25 10.48 -12.57 -0.13 -5.38 16 19 C 0.06 0.74 11.18 -17.03 -0.19 0.55 16 20 C 0.27 3.66 7.50 -16.95 -0.13 3.53 16 21 O -0.30 -3.61 10.49 -18.74 -0.20 -3.81 16 22 C 0.03 0.36 10.39 101.05 1.05 1.41 16 23 N -0.45 -7.36 9.17 -9.70 -0.09 -7.45 16 24 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 25 H 0.05 1.09 7.82 -51.93 -0.41 0.68 16 26 H 0.04 0.77 6.05 -51.93 -0.31 0.46 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.19 2.34 7.64 -52.48 -0.40 1.94 16 31 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -30.85 298.15 -4.35 -35.20 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.87 Total: -0.22 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.09 Total: 4.31 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.55 Total: -37.83 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.85 Total: -22.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.59 Total: 16.39 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.85 -4.35 -35.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791891043.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.488 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds