Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46922 * 2 1 4 4 H 1.08996 * 109.47066 * 305.59051 * 3 2 1 5 5 C 1.50696 * 109.47072 * 185.58085 * 3 2 1 6 6 H 1.08000 * 120.00802 * 274.99224 * 5 3 2 7 7 C 1.37884 * 119.99457 * 94.99759 * 5 3 2 8 8 N 1.31516 * 119.99443 * 184.83654 * 7 5 3 9 9 Si 1.86794 * 120.00024 * 4.84037 * 7 5 3 10 10 H 1.48498 * 109.47316 * 84.86637 * 9 7 5 11 11 H 1.48504 * 109.47080 * 204.86445 * 9 7 5 12 12 H 1.48494 * 109.47509 * 324.86463 * 9 7 5 13 13 O 1.45206 * 109.46875 * 65.58546 * 3 2 1 14 14 C 1.34686 * 117.00023 * 270.00185 * 13 3 2 15 15 O 1.21438 * 119.99950 * 359.97438 * 14 13 3 16 16 C 1.48030 * 120.00108 * 180.02562 * 14 13 3 17 17 C 1.39316 * 120.06187 * 179.97438 * 16 14 13 18 18 N 1.32158 * 120.01821 * 180.02562 * 17 16 14 19 19 C 1.31981 * 120.14130 * 359.97410 * 18 17 16 20 20 C 1.39471 * 120.12266 * 0.02562 * 19 18 17 21 21 O 1.35678 * 120.00474 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99537 * 180.02562 * 21 20 19 23 23 N 1.32166 * 119.98445 * 359.70058 * 20 19 18 24 24 H 1.09008 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47118 * 60.00374 * 1 2 3 26 26 H 1.08996 * 109.47406 * 299.99819 * 1 2 3 27 27 H 1.09001 * 109.47118 * 119.99626 * 2 1 3 28 28 H 1.08996 * 109.47406 * 240.00181 * 2 1 3 29 29 H 0.97004 * 119.99626 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.99159 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.94033 * 180.02562 * 19 18 17 32 32 H 1.08994 * 109.47165 * 60.00082 * 22 21 20 33 33 H 1.09003 * 109.46878 * 179.97438 * 22 21 20 34 34 H 1.09001 * 109.47262 * 300.00020 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5405 1.4449 -0.1382 6 1 4.1637 1.3341 0.7369 7 6 4.1180 1.5884 -1.3820 8 7 5.4231 1.4953 -1.5157 9 14 3.0468 1.9153 -2.8770 10 1 2.7808 3.3721 -2.9864 11 1 3.7473 1.4468 -4.0998 12 1 1.7609 1.1868 -2.7334 13 8 1.6677 2.0875 1.2466 14 6 0.4807 2.7232 1.2756 15 8 -0.2239 2.7389 0.2866 16 6 0.0355 3.4037 2.5125 17 6 -1.1918 4.0622 2.5436 18 7 -1.5882 4.6699 3.6482 19 6 -0.8238 4.6545 4.7240 20 6 0.4061 3.9971 4.6993 21 8 1.1903 3.9831 5.8064 22 6 2.4370 3.2914 5.7095 23 7 0.8049 3.3831 3.5989 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 5.8293 1.5960 -2.3908 30 1 -1.8192 4.0767 1.6646 31 1 -1.1511 5.1518 5.6251 32 1 3.0442 3.7449 4.9262 33 1 2.9640 3.3575 6.6614 34 1 2.2538 2.2446 5.4671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791891043.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = -96.493176 kcal Electronic energy + Delta-G solvation = -20243.005321 eV Core-core repulsion = 16948.169856 eV Total energy + Delta-G solvation = -3294.835465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.65436 -41.29380 -39.48206 -37.79572 -35.68968 -35.17973 -33.94813 -32.40924 -29.88682 -28.71583 -26.98324 -25.12326 -24.76455 -23.16441 -21.65189 -20.09054 -19.53525 -18.97455 -18.13934 -17.96108 -17.63050 -17.43984 -17.07410 -16.31865 -15.61876 -15.32810 -15.05200 -14.85352 -14.30265 -14.11027 -13.99074 -13.58319 -13.20832 -13.18976 -12.94487 -12.80154 -12.64879 -12.62658 -12.15632 -12.12830 -11.90282 -11.82108 -11.37764 -11.12177 -10.83243 -10.56753 -10.00566 -8.48802 -6.58918 -0.93383 -0.16881 1.23764 1.28058 1.28635 1.39129 1.56700 1.75603 2.18678 2.47104 2.68969 2.88682 3.07552 3.18449 3.79161 3.90876 4.12698 4.22553 4.26246 4.34487 4.36952 4.41205 4.54377 4.70832 4.88098 4.98467 5.04633 5.05965 5.31135 5.39341 5.51958 5.76609 5.83869 6.09515 6.36365 6.49381 6.75390 7.08210 8.66529 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.005874 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.212400 B = 4765.443573 C = 5324.159673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.188 3.812 4 H 0.043 0.957 5 C -0.532 4.532 6 H 0.044 0.956 7 C 0.036 3.964 8 N -0.922 5.922 9 Si 0.926 3.074 10 H -0.269 1.269 11 H -0.266 1.266 12 H -0.243 1.243 13 O -0.339 6.339 14 C 0.510 3.490 15 O -0.512 6.512 16 C 0.070 3.930 17 C 0.080 3.920 18 N -0.409 5.409 19 C 0.098 3.902 20 C 0.263 3.737 21 O -0.293 6.293 22 C 0.033 3.967 23 N -0.476 5.476 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.276 0.724 30 H 0.201 0.799 31 H 0.230 0.770 32 H 0.048 0.952 33 H 0.138 0.862 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 4.494 12.174 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.135 3.865 4 H 0.061 0.939 5 C -0.570 4.570 6 H 0.062 0.938 7 C -0.166 4.166 8 N -0.560 5.560 9 Si 0.748 3.252 10 H -0.194 1.194 11 H -0.191 1.191 12 H -0.167 1.167 13 O -0.254 6.254 14 C 0.352 3.648 15 O -0.402 6.402 16 C -0.067 4.067 17 C -0.076 4.076 18 N -0.122 5.122 19 C -0.068 4.068 20 C 0.077 3.923 21 O -0.197 6.197 22 C -0.062 4.062 23 N -0.209 5.209 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.218 0.782 31 H 0.246 0.754 32 H 0.067 0.933 33 H 0.156 0.844 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.897 4.533 11.926 18.142 hybrid contribution 0.686 -0.158 -1.038 1.254 sum -12.212 4.375 10.888 16.935 Atomic orbital electron populations 1.21835 0.94989 1.01968 1.01056 1.22024 0.95750 0.96538 1.02485 1.20993 0.94121 0.90682 0.80694 0.93950 1.20898 0.89572 1.51782 0.94698 0.93781 1.25680 0.96175 0.93185 1.01516 1.69964 1.11305 1.48820 1.25881 0.86047 0.80220 0.79892 0.79005 1.19401 1.19119 1.16655 1.86790 1.34304 1.62071 1.42247 1.20973 0.80522 0.76360 0.86911 1.90778 1.55185 1.59081 1.35191 1.20915 0.94217 1.00607 0.90930 1.23802 0.92996 0.92261 0.98566 1.68820 1.30720 1.14130 0.98572 1.24017 0.87527 0.95720 0.99518 1.21401 0.91891 0.92855 0.86165 1.86270 1.32096 1.71692 1.29675 1.23158 0.81702 0.96356 1.04997 1.67993 1.34466 1.18578 0.99863 0.90712 0.93035 0.94355 0.91916 0.90898 0.91411 0.78218 0.75409 0.93280 0.84403 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.57 71.98 0.62 -4.51 16 2 C -0.13 -5.60 5.63 30.60 0.17 -5.43 16 3 C 0.19 9.40 1.91 29.85 0.06 9.46 16 4 H 0.04 2.16 4.31 -2.39 -0.01 2.15 16 5 C -0.53 -31.00 9.25 25.60 0.24 -30.76 16 6 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 7 C 0.04 2.05 5.47 84.66 0.46 2.51 16 8 N -0.92 -55.73 13.96 21.45 0.30 -55.43 16 9 Si 0.93 43.40 26.99 68.60 1.85 45.25 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.24 -10.73 6.82 99.48 0.68 -10.05 16 13 O -0.34 -16.19 9.64 -55.95 -0.54 -16.73 16 14 C 0.51 20.80 6.43 70.42 0.45 21.25 16 15 O -0.51 -21.23 13.52 20.04 0.27 -20.96 16 16 C 0.07 2.33 6.75 41.80 0.28 2.62 16 17 C 0.08 2.10 10.76 84.90 0.91 3.02 16 18 N -0.41 -9.24 10.48 -193.68 -2.03 -11.27 16 19 C 0.10 1.88 11.18 84.97 0.95 2.83 16 20 C 0.26 6.60 7.50 84.94 0.64 7.24 16 21 O -0.29 -6.42 10.49 -89.96 -0.94 -7.36 16 22 C 0.03 0.68 10.39 113.37 1.18 1.86 16 23 N -0.48 -15.58 9.17 -297.51 -2.73 -18.30 16 24 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.05 1.91 7.82 -2.39 -0.02 1.89 16 26 H 0.04 1.39 6.05 -2.39 -0.01 1.38 16 27 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.20 4.63 7.64 -2.91 -0.02 4.60 16 31 H 0.23 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16 Total: -1.00 -69.06 298.15 3.23 -65.82 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.09 Total: 8.89 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.96 Total: 10.09 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -4.46 Total: -85.01 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.21 Total: -45.04 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.85 Total: 45.25 kcal Total: -69.06 3.23 -65.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791891043.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.668 kcal (2) G-P(sol) polarization free energy of solvation -69.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds