Wall clock time and date at job start Mon Mar 30 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 C 1.34776 * 120.00710 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99682 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00475 * 180.02562 * 14 12 2 17 17 C 1.50702 * 109.47246 * 179.97438 * 16 14 12 18 18 C 1.38233 * 119.58517 * 124.72163 * 17 16 14 19 19 C 1.38596 * 119.18599 * 179.77390 * 18 17 16 20 20 C 1.38873 * 118.40030 * 0.49699 * 19 18 17 21 21 F 1.35104 * 120.44713 * 179.76852 * 20 19 18 22 22 C 1.38424 * 119.11195 * 359.74987 * 20 19 18 23 23 N 1.31850 * 119.59145 * 305.00506 * 17 16 14 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 29 29 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 30 30 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 31 31 H 1.08994 * 109.46908 * 299.99876 * 16 14 12 32 32 H 1.09006 * 109.46757 * 60.00028 * 16 14 12 33 33 H 1.07999 * 120.40903 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.80194 * 180.22206 * 19 18 17 35 35 H 1.08005 * 119.63793 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8913 16 6 3.2959 -0.7461 3.3136 17 6 4.1335 0.2010 4.1337 18 6 3.8141 0.4206 5.4606 19 6 4.5928 1.2896 6.2083 20 6 5.6644 1.9174 5.5870 21 9 6.4479 2.7761 6.2756 22 6 5.9193 1.6514 4.2527 23 7 5.1585 0.8142 3.5752 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.4157 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 2.4484 -1.0890 3.9070 32 1 3.9017 -1.6022 3.0165 33 1 2.9705 -0.0820 5.9101 34 1 4.3690 1.4775 7.2480 35 1 6.7503 2.1353 3.7609 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798173847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:06 Heat of formation + Delta-G solvation = -63.317859 kcal Electronic energy + Delta-G solvation = -19761.332366 eV Core-core repulsion = 16480.308280 eV Total energy + Delta-G solvation = -3281.024086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -49.98675 -41.40796 -40.21132 -37.05949 -34.83363 -33.69793 -33.44760 -31.39869 -28.74494 -27.49426 -27.23596 -24.96222 -23.99468 -22.50824 -19.92518 -18.64421 -18.53864 -18.28776 -17.80646 -17.25847 -16.82797 -16.75485 -16.23792 -15.91060 -14.98711 -14.92374 -14.74476 -14.47909 -14.05445 -13.94068 -13.84223 -13.44036 -13.24992 -12.96520 -12.89355 -12.77491 -12.60973 -12.52765 -12.15318 -12.09282 -11.13924 -10.90395 -10.67906 -10.50821 -10.39422 -9.80699 -9.24064 -8.13146 -6.29509 -0.11292 0.18587 1.40226 1.42366 1.53498 1.92555 2.32088 2.46699 2.76396 3.00211 3.14597 3.32233 3.64932 3.79601 3.88183 3.99596 4.35133 4.43409 4.57567 4.66861 4.75695 4.79671 4.87592 4.88997 4.91614 4.99532 5.09176 5.14610 5.49615 5.62936 5.68861 5.72166 6.08807 6.19672 6.79752 6.90988 6.97019 7.36627 7.58486 8.91056 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031513 B = 0.004290 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.319072 B = 6525.714466 C = 6851.112657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.003 0.997 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.273 1.273 11 H -0.288 1.288 12 N -0.604 5.604 13 C 0.080 3.920 14 C 0.497 3.503 15 O -0.595 6.595 16 C -0.080 4.080 17 C 0.114 3.886 18 C -0.126 4.126 19 C -0.103 4.103 20 C 0.032 3.968 21 F -0.135 7.135 22 C 0.059 3.941 23 N -0.474 5.474 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.263 0.737 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.189 0.811 34 H 0.183 0.817 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -6.598 18.684 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.021 0.979 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.335 5.335 13 C -0.062 4.062 14 C 0.285 3.715 15 O -0.477 6.477 16 C -0.119 4.119 17 C -0.024 4.024 18 C -0.145 4.145 19 C -0.129 4.129 20 C 0.010 3.990 21 F -0.114 7.114 22 C -0.099 4.099 23 N -0.182 5.182 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.145 0.855 33 H 0.206 0.794 34 H 0.200 0.800 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.761 -6.046 17.580 18.967 hybrid contribution 0.397 0.571 -0.501 0.858 sum 4.158 -5.475 17.078 18.410 Atomic orbital electron populations 1.21862 0.97069 1.00202 0.99852 1.18472 0.91630 0.92014 0.81993 0.97914 1.21633 1.31551 1.12891 0.91279 0.92243 1.25743 0.95158 0.95671 1.02063 1.70034 1.37546 1.24028 1.24242 0.85422 0.78229 0.78481 0.78963 1.18873 1.19828 1.21383 1.48221 1.49436 1.13535 1.22347 1.21873 1.01380 0.80110 1.02819 1.21105 0.78161 0.86842 0.85386 1.90655 1.59088 1.19893 1.78018 1.20763 1.00703 0.97345 0.93128 1.21151 0.92740 0.95715 0.92776 1.22274 1.01110 0.98210 0.92922 1.22003 0.92593 0.95368 1.02934 1.18946 0.93824 0.94275 0.91939 1.91500 1.73132 1.67683 1.79057 1.23046 0.99740 0.96687 0.90464 1.67475 1.05588 1.06926 1.38209 0.93082 0.91731 0.96006 0.92756 0.92973 0.87653 0.91263 0.82780 0.85489 0.79381 0.79986 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.95 71.98 0.64 -5.69 16 2 C 0.26 13.79 2.64 44.24 0.12 13.90 16 3 H 0.00 0.18 6.90 -2.39 -0.02 0.17 16 4 C -0.53 -29.61 8.37 25.60 0.21 -29.40 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.81 16 8 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 9 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 N -0.60 -25.04 2.75 -826.79 -2.28 -27.31 16 13 C 0.08 2.31 9.48 127.77 1.21 3.53 16 14 C 0.50 20.17 7.61 87.66 0.67 20.84 16 15 O -0.60 -31.12 14.66 -3.04 -0.04 -31.17 16 16 C -0.08 -2.02 4.65 29.10 0.14 -1.88 16 17 C 0.11 3.15 5.76 42.56 0.25 3.40 16 18 C -0.13 -2.33 9.71 22.35 0.22 -2.12 16 19 C -0.10 -1.87 10.16 22.51 0.23 -1.64 16 20 C 0.03 0.76 7.35 22.47 0.17 0.92 16 21 F -0.13 -3.14 17.28 44.97 0.78 -2.36 16 22 C 0.06 1.72 11.17 84.73 0.95 2.67 16 23 N -0.47 -16.23 9.22 -183.70 -1.69 -17.93 16 24 H 0.05 2.19 6.66 -2.39 -0.02 2.18 16 25 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 26 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.89 6.44 -2.39 -0.02 1.87 16 30 H 0.07 2.05 6.43 -2.39 -0.02 2.04 16 31 H 0.15 2.28 7.13 -2.39 -0.02 2.26 16 32 H 0.13 2.76 8.11 -2.38 -0.02 2.74 16 33 H 0.19 1.72 7.95 -2.91 -0.02 1.70 16 34 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -78.84 301.28 5.38 -73.46 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.11 Total: 7.53 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.24 Total: 5.70 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -3.73 Total: -99.06 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -78.84 5.38 -73.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798173847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.147 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds