Wall clock time and date at job start Mon Mar 30 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46986 * 119.99876 * 8 6 4 11 11 H 1.48494 * 109.47457 * 240.00237 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 C 1.34776 * 119.99384 * 120.00492 * 12 2 1 15 15 O 1.21282 * 120.00477 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99436 * 180.02562 * 14 12 2 17 17 C 1.50704 * 109.46672 * 179.97438 * 16 14 12 18 18 C 1.38233 * 119.58641 * 124.72711 * 17 16 14 19 19 C 1.38594 * 119.18551 * 179.76905 * 18 17 16 20 20 C 1.38878 * 118.40278 * 0.49089 * 19 18 17 21 21 F 1.35095 * 120.44602 * 179.77255 * 20 19 18 22 22 C 1.38424 * 119.10656 * 359.74887 * 20 19 18 23 23 N 1.31838 * 119.59036 * 304.99393 * 17 16 14 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 29 29 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 30 30 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 31 31 H 1.08994 * 109.47107 * 299.99531 * 16 14 12 32 32 H 1.08995 * 109.47415 * 59.99832 * 16 14 12 33 33 H 1.08002 * 120.40653 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.80149 * 180.21464 * 19 18 17 35 35 H 1.08003 * 119.63167 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0860 1.1256 -1.8915 16 6 3.2951 -0.7459 -3.3141 17 6 4.1320 0.2015 -4.1345 18 6 5.4254 -0.1492 -4.4739 19 6 6.1860 0.7263 -5.2327 20 6 5.6174 1.9340 -5.6158 21 9 6.3232 2.8200 -6.3520 22 6 4.3175 2.2176 -5.2335 23 7 3.6234 1.3567 -4.5152 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 0.7376 -2.1443 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 3.9005 -1.6025 -3.0177 32 1 2.4472 -1.0880 -3.9073 33 1 5.8369 -1.0952 -4.1544 34 1 7.1981 0.4772 -5.5156 35 1 3.8671 3.1545 -5.5264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798173852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:19 Heat of formation + Delta-G solvation = -42.137046 kcal Electronic energy + Delta-G solvation = -19758.614614 eV Core-core repulsion = 16478.508998 eV Total energy + Delta-G solvation = -3280.105617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -49.03293 -40.30935 -38.71909 -35.28111 -33.05768 -32.51729 -32.38607 -29.62291 -27.54921 -26.00735 -25.19636 -23.99918 -22.77757 -20.90092 -18.36098 -17.68335 -17.35161 -16.58844 -16.38272 -15.90940 -15.71774 -15.13196 -14.83655 -14.29075 -14.02362 -13.85143 -13.42042 -13.02284 -12.69473 -12.51000 -12.39791 -12.17695 -11.67852 -11.54614 -11.45903 -11.04289 -10.81399 -10.65064 -10.22076 -10.16178 -9.97564 -9.52393 -9.16102 -9.01689 -8.71305 -8.40906 -7.53937 -6.06029 -4.14055 0.86239 1.08385 3.25965 3.33630 3.35958 3.44341 3.55372 3.95029 4.03031 4.29969 4.40613 4.55568 4.66870 4.82108 5.19721 5.25333 5.34583 5.41261 5.53482 5.68460 5.76750 5.81443 5.90915 6.06086 6.37633 6.55949 6.79379 6.87864 7.10532 7.46563 7.57159 7.73949 7.92313 8.04957 8.22495 8.56693 8.85748 9.11489 9.52548 10.99266 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004216 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.385901 B = 6640.351096 C = 6728.858955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.595 5.595 13 C 0.083 3.917 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.095 4.095 17 C 0.144 3.856 18 C -0.140 4.140 19 C -0.110 4.110 20 C 0.035 3.965 21 F -0.135 7.135 22 C 0.083 3.917 23 N -0.426 5.426 24 H 0.092 0.908 25 H 0.011 0.989 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -5.092 -14.994 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.295 3.705 15 O -0.413 6.413 16 C -0.135 4.135 17 C 0.006 3.994 18 C -0.160 4.160 19 C -0.137 4.137 20 C 0.013 3.987 21 F -0.114 7.114 22 C -0.077 4.077 23 N -0.133 5.133 24 H 0.111 0.889 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.607 -4.122 -14.500 16.084 hybrid contribution 1.314 -0.598 0.540 1.541 sum 6.920 -4.720 -13.960 16.281 Atomic orbital electron populations 1.22072 0.98229 0.99315 1.00785 1.18920 0.90854 0.94526 0.79864 0.91951 1.21366 1.31727 1.12963 0.90340 0.92216 1.24901 0.94982 0.94985 0.98968 1.69896 1.36404 1.22604 1.23604 0.86451 0.78582 0.79566 0.82838 1.19832 1.20959 1.20944 1.48208 1.49304 1.11590 1.23646 1.21608 0.98739 0.83388 1.02390 1.19948 0.79662 0.87160 0.83761 1.90685 1.57820 1.16692 1.76123 1.20725 1.00365 0.97079 0.95348 1.20818 0.92038 0.91964 0.94572 1.21879 0.94256 1.01106 0.98773 1.21558 1.01189 0.92714 0.98198 1.18850 0.92510 0.89608 0.97706 1.91498 1.78224 1.67095 1.74564 1.22926 0.89742 0.99906 0.95105 1.67553 1.36983 1.01605 1.07163 0.88939 0.96974 0.95224 0.92762 0.93876 0.92891 0.90094 0.87634 0.87382 0.83759 0.83705 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.12 7.99 -34.44 -0.28 -14.40 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.60 -12.52 2.75 -175.26 -0.48 -13.00 16 13 C 0.08 1.32 9.24 59.85 0.55 1.87 16 14 C 0.51 10.44 7.61 -10.98 -0.08 10.36 16 15 O -0.54 -13.45 14.66 5.56 0.08 -13.37 16 16 C -0.09 -1.34 4.65 -29.03 -0.14 -1.48 16 17 C 0.14 2.13 5.76 -82.59 -0.48 1.65 16 18 C -0.14 -1.62 9.71 -39.45 -0.38 -2.00 16 19 C -0.11 -1.21 10.16 -39.21 -0.40 -1.60 16 20 C 0.03 0.43 7.35 -39.28 -0.29 0.15 16 21 F -0.14 -1.64 17.28 2.25 0.04 -1.61 16 22 C 0.08 1.15 11.17 -17.47 -0.20 0.96 16 23 N -0.43 -7.07 9.22 -9.42 -0.09 -7.16 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 30 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 31 H 0.11 1.15 7.13 -51.93 -0.37 0.78 16 32 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 33 H 0.14 1.19 7.95 -52.49 -0.42 0.78 16 34 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -33.11 301.96 -6.11 -39.22 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.19 Total: -0.38 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.63 Total: 0.43 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.06 Total: -44.76 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.11 -6.11 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798173852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.917 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds