Wall clock time and date at job start Mon Mar 30 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47104 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46986 * 119.99876 * 8 6 4 11 11 H 1.48494 * 109.47457 * 240.00237 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 C 1.34776 * 119.99384 * 120.00492 * 12 2 1 15 15 O 1.21282 * 120.00477 * 359.97438 * 14 12 2 16 16 C 1.50706 * 119.99436 * 180.02562 * 14 12 2 17 17 C 1.50704 * 109.46672 * 179.97438 * 16 14 12 18 18 C 1.38233 * 119.58641 * 124.72711 * 17 16 14 19 19 C 1.38594 * 119.18551 * 179.76905 * 18 17 16 20 20 C 1.38878 * 118.40278 * 0.49089 * 19 18 17 21 21 F 1.35095 * 120.44602 * 179.77255 * 20 19 18 22 22 C 1.38424 * 119.10656 * 359.74887 * 20 19 18 23 23 N 1.31838 * 119.59036 * 304.99393 * 17 16 14 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 29 29 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 30 30 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 31 31 H 1.08994 * 109.47107 * 299.99531 * 16 14 12 32 32 H 1.08995 * 109.47415 * 59.99832 * 16 14 12 33 33 H 1.08002 * 120.40653 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.80149 * 180.21464 * 19 18 17 35 35 H 1.08003 * 119.63167 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0860 1.1256 -1.8915 16 6 3.2951 -0.7459 -3.3141 17 6 4.1320 0.2015 -4.1345 18 6 5.4254 -0.1492 -4.4739 19 6 6.1860 0.7263 -5.2327 20 6 5.6174 1.9340 -5.6158 21 9 6.3232 2.8200 -6.3520 22 6 4.3175 2.2176 -5.2335 23 7 3.6234 1.3567 -4.5152 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 0.7376 -2.1443 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 3.9005 -1.6025 -3.0177 32 1 2.4472 -1.0880 -3.9073 33 1 5.8369 -1.0952 -4.1544 34 1 7.1981 0.4772 -5.5156 35 1 3.8671 3.1545 -5.5264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798173852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:13 Heat of formation + Delta-G solvation = -63.993914 kcal Electronic energy + Delta-G solvation = -19759.562399 eV Core-core repulsion = 16478.508998 eV Total energy + Delta-G solvation = -3281.053402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -49.98930 -41.40846 -40.20890 -37.05341 -34.82754 -33.69746 -33.44974 -31.40360 -28.75247 -27.42857 -27.27267 -24.96516 -23.99877 -22.52131 -19.93295 -18.63874 -18.50858 -18.37340 -17.76013 -17.21999 -16.83107 -16.75524 -16.24242 -15.89801 -14.97026 -14.93806 -14.83811 -14.32161 -14.05612 -13.89952 -13.83446 -13.51802 -13.21493 -13.01802 -12.83207 -12.75026 -12.62975 -12.57511 -12.17318 -12.07588 -11.14741 -10.90666 -10.68126 -10.51375 -10.39951 -9.80737 -9.23617 -8.12404 -6.29150 -0.11520 0.17890 1.42164 1.43748 1.55135 1.93332 2.31456 2.47200 2.76136 3.00109 3.15698 3.31420 3.64739 3.79469 3.87908 3.99946 4.34965 4.43979 4.58824 4.66702 4.76560 4.81633 4.84708 4.88683 4.92320 4.98987 5.10358 5.14302 5.50885 5.61465 5.66820 5.71582 6.08431 6.19603 6.80510 6.90510 6.95911 7.36947 7.58535 8.92228 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004216 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.385901 B = 6640.351096 C = 6728.858955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.262 3.738 3 H 0.003 0.997 4 C -0.534 4.534 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.604 5.604 13 C 0.077 3.923 14 C 0.497 3.503 15 O -0.596 6.596 16 C -0.079 4.079 17 C 0.115 3.885 18 C -0.128 4.128 19 C -0.104 4.104 20 C 0.031 3.969 21 F -0.135 7.135 22 C 0.061 3.939 23 N -0.471 5.471 24 H 0.064 0.936 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.263 0.737 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.001 -8.201 -15.891 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.021 0.979 4 C -0.573 4.573 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.335 5.335 13 C -0.065 4.065 14 C 0.285 3.715 15 O -0.477 6.477 16 C -0.119 4.119 17 C -0.023 4.023 18 C -0.148 4.148 19 C -0.130 4.130 20 C 0.010 3.990 21 F -0.113 7.113 22 C -0.098 4.098 23 N -0.179 5.179 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.203 0.797 34 H 0.199 0.801 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.214 -7.278 -15.433 18.525 hybrid contribution 0.828 0.421 0.763 1.202 sum 8.043 -6.857 -14.670 18.081 Atomic orbital electron populations 1.21856 0.97466 1.00037 0.99587 1.18468 0.91402 0.92098 0.82092 0.97941 1.21645 1.31627 1.12999 0.90996 0.91602 1.25791 0.95151 0.95659 1.02217 1.70055 1.37598 1.24112 1.24246 0.85380 0.78165 0.78523 0.78774 1.18416 1.21450 1.20129 1.48220 1.49357 1.13565 1.22374 1.21906 1.01560 0.80327 1.02711 1.21099 0.78539 0.86785 0.85054 1.90656 1.59760 1.19583 1.77674 1.20753 1.01815 0.97307 0.92034 1.21131 0.93730 0.91878 0.95569 1.22266 0.92624 1.02476 0.97396 1.21993 1.02555 0.91484 0.96937 1.18942 0.92104 0.90360 0.97606 1.91497 1.78025 1.67290 1.74538 1.23069 0.90813 1.00214 0.95713 1.67462 1.38852 1.03077 1.08549 0.91706 0.96571 0.93302 0.92797 0.91907 0.88169 0.91440 0.83330 0.84972 0.79697 0.80136 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.97 71.98 0.65 -5.83 16 2 C 0.26 13.82 2.64 44.25 0.12 13.93 16 3 H 0.00 0.17 6.90 -2.39 -0.02 0.15 16 4 C -0.53 -28.94 7.99 25.60 0.20 -28.73 16 5 H 0.07 3.40 7.33 -2.91 -0.02 3.38 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.00 11.32 21.45 0.24 -53.75 16 8 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.60 -25.02 2.75 -826.78 -2.28 -27.29 16 13 C 0.08 2.22 9.24 127.77 1.18 3.40 16 14 C 0.50 20.19 7.61 87.66 0.67 20.86 16 15 O -0.60 -31.13 14.66 -3.04 -0.04 -31.17 16 16 C -0.08 -2.01 4.65 29.11 0.14 -1.88 16 17 C 0.12 3.18 5.76 42.56 0.25 3.42 16 18 C -0.13 -2.48 9.71 22.35 0.22 -2.27 16 19 C -0.10 -1.94 10.16 22.51 0.23 -1.71 16 20 C 0.03 0.75 7.35 22.47 0.17 0.91 16 21 F -0.13 -3.13 17.28 44.97 0.78 -2.35 16 22 C 0.06 1.72 11.17 84.73 0.95 2.67 16 23 N -0.47 -15.76 9.22 -183.71 -1.69 -17.46 16 24 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 25 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.92 6.44 -2.39 -0.02 1.90 16 30 H 0.07 2.14 7.02 -2.38 -0.02 2.12 16 31 H 0.15 2.42 7.13 -2.39 -0.02 2.40 16 32 H 0.13 2.69 8.11 -2.39 -0.02 2.67 16 33 H 0.19 1.97 7.95 -2.91 -0.02 1.95 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.17 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -77.60 301.96 5.34 -72.26 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.10 Total: 8.98 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.20 Total: 5.83 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -3.73 Total: -98.50 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -77.60 5.34 -72.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798173852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.268 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds