Wall clock time and date at job start Mon Mar 30 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46822 * 2 1 4 4 C 1.46497 * 119.99999 * 269.99720 * 3 2 1 5 5 C 1.50704 * 109.47262 * 270.00206 * 4 3 2 6 6 H 1.07998 * 120.00189 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00095 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99888 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99937 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46929 * 90.00386 * 9 7 5 11 11 H 1.48500 * 109.47347 * 210.00175 * 9 7 5 12 12 H 1.48496 * 109.47316 * 330.00676 * 9 7 5 13 13 C 1.34778 * 120.00092 * 90.00164 * 3 2 1 14 14 O 1.21281 * 120.00276 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00045 * 359.97438 * 13 3 2 16 16 C 1.50698 * 109.47675 * 180.02562 * 15 13 3 17 17 C 1.38232 * 119.59260 * 124.99570 * 16 15 13 18 18 C 1.38596 * 119.18886 * 180.02562 * 17 16 15 19 19 C 1.38879 * 118.39652 * 0.25621 * 18 17 16 20 20 F 1.35106 * 120.44068 * 179.74732 * 19 18 17 21 21 C 1.38422 * 119.11596 * 359.51901 * 19 18 17 22 22 N 1.31848 * 119.58665 * 305.02401 * 16 15 13 23 23 H 1.08999 * 109.47320 * 60.00141 * 1 2 3 24 24 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47176 * 299.99661 * 1 2 3 26 26 H 1.08999 * 109.47359 * 239.99816 * 2 1 3 27 27 H 1.08999 * 109.47320 * 119.99859 * 2 1 3 28 28 H 1.09001 * 109.47439 * 29.99979 * 4 3 2 29 29 H 1.08996 * 109.47350 * 150.00409 * 4 3 2 30 30 H 0.97003 * 119.99844 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47563 * 59.99977 * 15 13 3 32 32 H 1.09001 * 109.46967 * 300.00081 * 15 13 3 33 33 H 1.08002 * 120.40687 * 0.02599 * 17 16 15 34 34 H 1.08002 * 120.79700 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.63454 * 180.20814 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 5.3916 2.1843 -3.2568 9 14 3.0131 3.4360 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4067 3.3137 -5.3553 12 1 1.6135 2.9693 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3171 2.2298 3.6178 17 6 1.3616 2.4822 4.5842 18 6 1.6701 3.3332 5.6337 19 6 2.9345 3.9064 5.6695 20 9 3.2774 4.7460 6.6709 21 6 3.8404 3.6023 4.6680 22 7 3.5101 2.7872 3.6854 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7177 2.5748 -4.0827 31 1 2.6211 0.4186 2.5303 32 1 0.9432 1.0126 2.5298 33 1 0.3865 2.0220 4.5222 34 1 0.9431 3.5489 6.4027 35 1 4.8272 4.0407 4.6894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798283120.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:04 Heat of formation + Delta-G solvation = -41.600840 kcal Electronic energy + Delta-G solvation = -19768.796087 eV Core-core repulsion = 16488.713722 eV Total energy + Delta-G solvation = -3280.082365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.02777 -40.33347 -38.82031 -35.35463 -32.98633 -32.51264 -32.35946 -30.32249 -28.66600 -26.93001 -24.01020 -23.07384 -22.94075 -21.66475 -18.44155 -17.68137 -17.32640 -16.89790 -16.49791 -16.25028 -15.79164 -15.18527 -14.75782 -14.17072 -14.03903 -13.74928 -13.60046 -13.46946 -13.03800 -12.79982 -12.53252 -12.34460 -12.03920 -11.94289 -11.63883 -11.35701 -10.94749 -10.69919 -10.47412 -10.12933 -9.98327 -9.50474 -9.48604 -9.08306 -8.74007 -8.55073 -7.68264 -6.04651 -4.02811 0.85699 1.08190 3.31063 3.36839 3.38425 3.39003 3.52159 3.91286 3.95520 4.30513 4.42718 4.51307 4.67084 4.78831 5.06061 5.25288 5.27705 5.31664 5.34576 5.51980 5.55728 5.69312 5.74538 5.76119 5.88267 5.98988 6.15366 6.38991 6.55680 6.74357 6.98107 7.38820 7.65404 7.94376 8.28543 8.51594 8.98308 9.04498 9.55842 11.08928 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.005008 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.933985 B = 5589.409036 C = 6354.175045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.514 3.486 14 O -0.523 6.523 15 C -0.095 4.095 16 C 0.142 3.858 17 C -0.142 4.142 18 C -0.111 4.111 19 C 0.035 3.965 20 F -0.135 7.135 21 C 0.085 3.915 22 N -0.421 5.421 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -3.644 15.822 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.399 6.399 15 C -0.135 4.135 16 C 0.004 3.996 17 C -0.162 4.162 18 C -0.137 4.137 19 C 0.014 3.986 20 F -0.114 7.114 21 C -0.075 4.075 22 N -0.129 5.129 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.412 -3.139 15.025 18.548 hybrid contribution -0.991 0.871 0.171 1.330 sum -11.403 -2.269 15.196 19.134 Atomic orbital electron populations 1.22245 0.96854 1.01561 1.02193 1.21450 0.93290 0.83955 1.03207 1.47904 1.64581 1.13348 1.06895 1.19619 0.97281 0.93300 0.80053 1.21348 0.95353 1.32760 1.06994 0.90695 1.24854 0.94959 0.95820 0.97389 1.69901 1.15117 1.45101 1.23556 0.86865 0.81467 0.81653 0.79761 1.19994 1.21114 1.19117 1.19893 0.78656 0.87038 0.84476 1.90704 1.44317 1.18011 1.86831 1.20738 1.03603 0.98241 0.90921 1.20812 0.89382 0.95094 0.94299 1.21851 1.00791 0.99108 0.94440 1.21544 0.95383 0.97091 0.99725 1.18871 0.95778 0.94776 0.89206 1.91502 1.92539 1.68758 1.58562 1.22974 0.99865 0.95780 0.88871 1.67602 1.19300 1.06077 1.19904 0.92239 0.91961 0.93025 0.89697 0.91355 0.95339 0.94742 0.92629 0.87114 0.87766 0.83858 0.83734 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.96 2.46 -175.07 -0.43 -12.39 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 6 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.35 7.60 -10.99 -0.08 10.26 16 14 O -0.52 -13.08 14.91 5.56 0.08 -13.00 16 15 C -0.09 -1.32 4.65 -29.04 -0.14 -1.46 16 16 C 0.14 2.10 5.76 -82.59 -0.48 1.62 16 17 C -0.14 -1.57 9.71 -39.45 -0.38 -1.96 16 18 C -0.11 -1.19 10.16 -39.21 -0.40 -1.59 16 19 C 0.04 0.44 7.35 -39.28 -0.29 0.16 16 20 F -0.13 -1.66 17.28 2.25 0.04 -1.62 16 21 C 0.08 1.22 11.17 -17.47 -0.20 1.03 16 22 N -0.42 -7.27 9.22 -9.42 -0.09 -7.36 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.54 7.22 -51.93 -0.37 0.16 16 26 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 27 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.11 1.39 7.40 -51.93 -0.38 1.00 16 32 H 0.10 1.04 6.91 -51.93 -0.36 0.68 16 33 H 0.14 1.08 7.95 -52.49 -0.42 0.66 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -36.13 305.00 -6.05 -42.19 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.30 Total: -2.04 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.07 Total: -0.25 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.26 Total: -47.02 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.13 -6.05 -42.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798283120.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.587 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds