Wall clock time and date at job start Mon Mar 30 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46822 * 2 1 4 4 C 1.46497 * 119.99999 * 269.99720 * 3 2 1 5 5 C 1.50704 * 109.47262 * 270.00206 * 4 3 2 6 6 H 1.07998 * 120.00189 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00095 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99888 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99937 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46929 * 90.00386 * 9 7 5 11 11 H 1.48500 * 109.47347 * 210.00175 * 9 7 5 12 12 H 1.48496 * 109.47316 * 330.00676 * 9 7 5 13 13 C 1.34778 * 120.00092 * 90.00164 * 3 2 1 14 14 O 1.21281 * 120.00276 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00045 * 359.97438 * 13 3 2 16 16 C 1.50698 * 109.47675 * 180.02562 * 15 13 3 17 17 C 1.38232 * 119.59260 * 124.99570 * 16 15 13 18 18 C 1.38596 * 119.18886 * 180.02562 * 17 16 15 19 19 C 1.38879 * 118.39652 * 0.25621 * 18 17 16 20 20 F 1.35106 * 120.44068 * 179.74732 * 19 18 17 21 21 C 1.38422 * 119.11596 * 359.51901 * 19 18 17 22 22 N 1.31848 * 119.58665 * 305.02401 * 16 15 13 23 23 H 1.08999 * 109.47320 * 60.00141 * 1 2 3 24 24 H 1.08999 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47176 * 299.99661 * 1 2 3 26 26 H 1.08999 * 109.47359 * 239.99816 * 2 1 3 27 27 H 1.08999 * 109.47320 * 119.99859 * 2 1 3 28 28 H 1.09001 * 109.47439 * 29.99979 * 4 3 2 29 29 H 1.08996 * 109.47350 * 150.00409 * 4 3 2 30 30 H 0.97003 * 119.99844 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47563 * 59.99977 * 15 13 3 32 32 H 1.09001 * 109.46967 * 300.00081 * 15 13 3 33 33 H 1.08002 * 120.40687 * 0.02599 * 17 16 15 34 34 H 1.08002 * 120.79700 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.63454 * 180.20814 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 5.3916 2.1843 -3.2568 9 14 3.0131 3.4360 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4067 3.3137 -5.3553 12 1 1.6135 2.9693 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9912 1.3064 2.4723 16 6 2.3171 2.2298 3.6178 17 6 1.3616 2.4822 4.5842 18 6 1.6701 3.3332 5.6337 19 6 2.9345 3.9064 5.6695 20 9 3.2774 4.7460 6.6709 21 6 3.8404 3.6023 4.6680 22 7 3.5101 2.7872 3.6854 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 5.7177 2.5748 -4.0827 31 1 2.6211 0.4186 2.5303 32 1 0.9432 1.0126 2.5298 33 1 0.3865 2.0220 4.5222 34 1 0.9431 3.5489 6.4027 35 1 4.8272 4.0407 4.6894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798283120.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:04 Heat of formation + Delta-G solvation = -67.092606 kcal Electronic energy + Delta-G solvation = -19769.901493 eV Core-core repulsion = 16488.713722 eV Total energy + Delta-G solvation = -3281.187771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.99435 -41.44112 -40.24338 -36.91879 -34.90407 -33.73489 -33.45635 -31.78462 -30.07573 -28.45062 -25.03845 -24.59683 -24.18215 -23.02345 -19.90466 -19.09535 -18.63032 -18.39187 -17.83605 -17.51090 -16.78766 -16.65736 -16.34373 -15.70869 -15.04431 -14.92687 -14.84081 -14.64517 -14.49676 -14.04593 -13.94137 -13.73120 -13.42633 -13.23563 -12.98632 -12.87021 -12.51956 -12.31605 -12.01521 -11.80868 -11.73082 -10.91310 -10.83117 -10.67862 -10.43068 -9.81888 -9.34603 -8.33501 -6.37933 -0.12343 0.18129 1.30873 1.35651 1.43863 1.89196 2.29445 2.31005 2.70896 2.99102 3.01093 3.31405 3.62528 3.77741 3.82855 3.96568 4.20510 4.33120 4.41873 4.51619 4.63896 4.70768 4.75448 4.85149 4.88129 4.97093 4.97676 5.08697 5.09786 5.45918 5.50792 5.63972 5.71687 6.26466 6.63847 6.78050 6.95956 7.23221 7.52109 8.83903 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.005008 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.933985 B = 5589.409036 C = 6354.175045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.533 4.533 6 H 0.026 0.974 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.585 6.585 15 C -0.080 4.080 16 C 0.113 3.887 17 C -0.123 4.123 18 C -0.102 4.102 19 C 0.033 3.967 20 F -0.135 7.135 21 C 0.058 3.942 22 N -0.476 5.476 23 H 0.042 0.958 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.013 0.987 30 H 0.268 0.732 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.192 0.808 34 H 0.184 0.816 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.353 -4.567 17.095 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.026 4.026 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.044 0.956 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.159 1.159 13 C 0.290 3.710 14 O -0.465 6.465 15 C -0.120 4.120 16 C -0.025 4.025 17 C -0.142 4.142 18 C -0.128 4.128 19 C 0.011 3.989 20 F -0.114 7.114 21 C -0.101 4.101 22 N -0.184 5.184 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.174 0.826 33 H 0.209 0.791 34 H 0.202 0.798 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.406 -4.122 16.324 22.158 hybrid contribution 0.328 1.107 -0.140 1.163 sum -14.077 -3.015 16.184 21.661 Atomic orbital electron populations 1.22170 0.93603 1.03729 1.02336 1.21817 0.95872 0.80945 1.04006 1.48046 1.64544 1.15276 1.05561 1.19228 0.94538 0.92851 0.82882 1.21605 0.97240 1.31854 1.06501 0.95581 1.25877 0.96723 0.97244 0.99055 1.70063 1.17492 1.46753 1.24506 0.85707 0.80577 0.78815 0.77770 1.20556 1.19896 1.15882 1.21036 0.77053 0.86649 0.86273 1.90668 1.46916 1.20965 1.87900 1.20789 1.06901 0.97578 0.86740 1.21151 0.89695 0.95945 0.95729 1.22275 1.01508 0.97823 0.92636 1.22013 0.94822 0.95672 1.00281 1.18947 0.96487 0.94795 0.88636 1.91500 1.92696 1.68800 1.58374 1.23017 1.00767 0.96592 0.89680 1.67483 1.21644 1.07807 1.21489 0.93881 0.88705 0.91128 0.91454 0.88192 0.93357 0.96844 0.92356 0.85823 0.82627 0.79124 0.79823 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.60 5.93 86.38 0.51 3.11 16 3 N -0.60 -23.96 2.46 -826.18 -2.03 -25.99 16 4 C 0.23 11.24 4.23 85.63 0.36 11.60 16 5 C -0.53 -32.22 9.94 25.60 0.25 -31.97 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.52 5.47 84.66 0.46 0.98 16 8 N -0.95 -61.52 13.96 21.45 0.30 -61.22 16 9 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 13 C 0.50 20.06 7.60 87.65 0.67 20.73 16 14 O -0.58 -30.23 14.91 -3.03 -0.05 -30.28 16 15 C -0.08 -2.04 4.65 29.10 0.14 -1.90 16 16 C 0.11 3.13 5.76 42.55 0.25 3.37 16 17 C -0.12 -2.22 9.71 22.35 0.22 -2.00 16 18 C -0.10 -1.82 10.16 22.51 0.23 -1.59 16 19 C 0.03 0.80 7.35 22.47 0.17 0.96 16 20 F -0.13 -3.19 17.28 44.97 0.78 -2.41 16 21 C 0.06 1.74 11.17 84.73 0.95 2.69 16 22 N -0.48 -16.81 9.22 -183.71 -1.69 -18.51 16 23 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.09 7.22 -2.39 -0.02 1.07 16 26 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 27 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 28 H 0.05 2.18 7.13 -2.39 -0.02 2.17 16 29 H 0.01 0.72 6.85 -2.39 -0.02 0.71 16 30 H 0.27 16.12 8.31 -92.71 -0.77 15.34 16 31 H 0.12 2.78 7.40 -2.38 -0.02 2.76 16 32 H 0.16 2.22 6.91 -2.39 -0.02 2.21 16 33 H 0.19 1.55 7.95 -2.91 -0.02 1.53 16 34 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -86.58 305.00 5.17 -81.41 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.04 Total: 5.89 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.93 Total: 3.68 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.42 Total: -105.71 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -86.58 5.17 -81.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798283120.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -86.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds