Wall clock time and date at job start Mon Mar 30 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50698 * 109.47518 * 174.42146 * 3 2 1 6 6 H 1.07998 * 119.99791 * 114.19155 * 5 3 2 7 7 C 1.37876 * 120.00110 * 294.20509 * 5 3 2 8 8 N 1.31513 * 120.00151 * 159.34408 * 7 5 3 9 9 Si 1.86808 * 119.99880 * 339.33554 * 7 5 3 10 10 H 1.48499 * 109.47110 * 270.00487 * 9 7 5 11 11 H 1.48496 * 109.46937 * 30.00855 * 9 7 5 12 12 H 1.48503 * 109.46837 * 150.00358 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00152 * 180.02562 * 14 13 3 17 17 C 1.50702 * 109.47373 * 179.97438 * 16 14 13 18 18 C 1.38231 * 119.59244 * 124.71822 * 17 16 14 19 19 C 1.38597 * 119.18926 * 179.77053 * 18 17 16 20 20 C 1.38876 * 118.39607 * 0.49947 * 19 18 17 21 21 F 1.35103 * 120.44509 * 179.77398 * 20 19 18 22 22 C 1.38426 * 119.11696 * 359.74465 * 20 19 18 23 23 N 1.31850 * 119.58640 * 304.99349 * 17 16 14 24 24 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97000 * 120.00114 * 354.92906 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.09007 * 109.46870 * 299.99494 * 16 14 13 32 32 H 1.08996 * 109.47603 * 59.99116 * 16 14 13 33 33 H 1.08001 * 120.40552 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.79788 * 180.21845 * 19 18 17 35 35 H 1.07996 * 119.63880 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4448 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9232 2.8820 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6800 17 6 -1.3374 3.8768 -2.5637 18 6 -1.5696 5.2154 -2.8191 19 6 -2.8603 5.7095 -2.7143 20 6 -3.8741 4.8355 -2.3441 21 9 -5.1464 5.2739 -2.2249 22 6 -3.5637 3.5089 -2.0992 23 7 -2.3238 3.0747 -2.2144 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8788 0.5739 0.4635 30 1 2.2909 2.1165 -1.9977 31 1 0.7551 4.1435 -2.8892 32 1 0.1004 2.6015 -3.4908 33 1 -0.7560 5.8673 -3.1008 34 1 -3.0717 6.7501 -2.9114 35 1 -4.3454 2.8220 -1.8104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798302456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:43 Heat of formation + Delta-G solvation = -54.946302 kcal Electronic energy + Delta-G solvation = -19835.933394 eV Core-core repulsion = 16555.272326 eV Total energy + Delta-G solvation = -3280.661068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.11007 -40.40208 -38.85343 -35.24506 -32.82156 -32.60345 -32.35617 -31.27679 -28.22809 -26.78359 -24.08520 -22.85140 -22.20041 -20.48692 -19.45894 -17.92664 -17.72799 -17.37711 -16.34117 -16.23118 -15.83191 -15.33837 -14.85265 -14.19038 -13.96271 -13.90998 -13.38126 -13.21045 -12.87429 -12.69900 -12.47979 -12.39662 -12.05034 -11.83653 -11.42720 -10.75649 -10.65486 -10.42153 -10.06398 -9.83437 -9.67671 -9.62164 -9.20610 -9.07472 -8.85071 -8.30580 -8.01389 -6.57903 -4.20389 0.77137 0.99500 3.30246 3.42149 3.45579 3.47189 3.62444 3.86294 4.04730 4.21005 4.45000 4.48467 4.58390 4.74715 5.14251 5.16485 5.34396 5.42607 5.45599 5.68453 5.71699 5.81508 6.15135 6.17177 6.36023 6.47408 6.77221 6.86350 7.02804 7.13855 7.41825 7.46679 7.70185 7.82442 8.25218 8.52585 8.72843 9.04728 9.46605 10.80617 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.004414 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.213195 B = 6341.317667 C = 6548.055672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.622 4.622 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.895 5.895 9 Si 1.033 2.967 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.533 6.533 16 C -0.098 4.098 17 C 0.144 3.856 18 C -0.140 4.140 19 C -0.110 4.110 20 C 0.036 3.964 21 F -0.135 7.135 22 C 0.082 3.918 23 N -0.425 5.425 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 7.955 -10.596 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.146 3.854 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.527 5.527 9 Si 0.860 3.140 10 H -0.211 1.211 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.411 6.411 16 C -0.138 4.138 17 C 0.006 3.994 18 C -0.160 4.160 19 C -0.137 4.137 20 C 0.014 3.986 21 F -0.113 7.113 22 C -0.077 4.077 23 N -0.132 5.132 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.283 6.705 -8.118 17.745 hybrid contribution -0.121 1.384 -2.164 2.571 sum -14.405 8.090 -10.282 19.459 Atomic orbital electron populations 1.21881 0.97125 0.98743 1.02295 1.22195 0.93911 0.99686 1.00910 1.19076 0.95576 0.88543 0.82197 0.94000 1.22062 0.89835 1.49351 1.04694 0.92034 1.25623 0.96833 0.91985 1.01820 1.70834 1.10554 1.40287 1.31034 0.84193 0.76498 0.77357 0.75938 1.21058 1.19281 1.21001 1.46230 1.14505 1.56405 1.18171 1.19997 0.82699 0.79590 0.88710 1.90699 1.50371 1.59136 1.40853 1.20697 0.91781 1.02202 0.99155 1.20756 0.94600 0.90021 0.94065 1.21887 0.96993 0.96042 1.01049 1.21569 0.92255 1.00539 0.99291 1.18859 0.79910 0.94823 1.04969 1.91505 1.36088 1.89991 1.93757 1.22917 0.94818 0.92224 0.97747 1.67547 0.98711 1.38214 1.08742 0.95354 0.93152 0.92720 0.93278 0.92389 0.91979 0.77605 0.87538 0.87270 0.83744 0.83680 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.53 37.16 0.32 -2.67 16 2 C -0.13 -2.88 5.03 -26.73 -0.13 -3.02 16 3 C 0.25 5.89 1.78 -69.08 -0.12 5.77 16 4 H 0.04 1.09 5.99 -51.93 -0.31 0.78 16 5 C -0.62 -16.57 8.97 -34.44 -0.31 -16.88 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.24 5.25 -17.82 -0.09 1.15 16 8 N -0.89 -26.44 13.70 55.43 0.76 -25.68 16 9 Si 1.03 25.11 26.33 -169.99 -4.48 20.63 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.25 5.88 56.52 0.33 -5.92 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.70 -13.64 5.03 -54.93 -0.28 -13.91 16 14 C 0.51 9.17 6.36 -10.99 -0.07 9.10 16 15 O -0.53 -11.62 12.47 5.55 0.07 -11.55 16 16 C -0.10 -1.23 6.10 -29.04 -0.18 -1.41 16 17 C 0.14 1.93 5.76 -82.59 -0.48 1.45 16 18 C -0.14 -1.46 9.71 -39.45 -0.38 -1.85 16 19 C -0.11 -1.11 10.16 -39.21 -0.40 -1.51 16 20 C 0.04 0.42 7.35 -39.28 -0.29 0.13 16 21 F -0.13 -1.54 17.28 2.25 0.04 -1.50 16 22 C 0.08 1.06 11.17 -17.47 -0.20 0.86 16 23 N -0.42 -6.44 9.22 -9.42 -0.09 -6.53 16 24 H 0.03 0.52 8.14 -51.94 -0.42 0.10 16 25 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 26 H 0.05 1.14 5.63 -51.93 -0.29 0.84 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.36 5.64 -51.93 -0.29 1.06 16 29 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 30 H 0.39 6.60 8.53 -40.82 -0.35 6.26 16 31 H 0.11 1.01 7.87 -51.92 -0.41 0.60 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.14 1.07 7.95 -52.49 -0.42 0.65 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -32.45 297.02 -6.06 -38.51 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.23 Total: 4.41 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.33 Total: -8.86 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.40 Total: -46.12 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.48 Total: 20.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.45 -6.06 -38.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798302456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.435 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds