Wall clock time and date at job start Mon Mar 30 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50698 * 109.47518 * 174.42146 * 3 2 1 6 6 H 1.07998 * 119.99791 * 114.19155 * 5 3 2 7 7 C 1.37876 * 120.00110 * 294.20509 * 5 3 2 8 8 N 1.31513 * 120.00151 * 159.34408 * 7 5 3 9 9 Si 1.86808 * 119.99880 * 339.33554 * 7 5 3 10 10 H 1.48499 * 109.47110 * 270.00487 * 9 7 5 11 11 H 1.48496 * 109.46937 * 30.00855 * 9 7 5 12 12 H 1.48503 * 109.46837 * 150.00358 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00152 * 180.02562 * 14 13 3 17 17 C 1.50702 * 109.47373 * 179.97438 * 16 14 13 18 18 C 1.38231 * 119.59244 * 124.71822 * 17 16 14 19 19 C 1.38597 * 119.18926 * 179.77053 * 18 17 16 20 20 C 1.38876 * 118.39607 * 0.49947 * 19 18 17 21 21 F 1.35103 * 120.44509 * 179.77398 * 20 19 18 22 22 C 1.38426 * 119.11696 * 359.74465 * 20 19 18 23 23 N 1.31850 * 119.58640 * 304.99349 * 17 16 14 24 24 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97000 * 120.00114 * 354.92906 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.09007 * 109.46870 * 299.99494 * 16 14 13 32 32 H 1.08996 * 109.47603 * 59.99116 * 16 14 13 33 33 H 1.08001 * 120.40552 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.79788 * 180.21845 * 19 18 17 35 35 H 1.07996 * 119.63880 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4448 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9232 2.8820 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6800 17 6 -1.3374 3.8768 -2.5637 18 6 -1.5696 5.2154 -2.8191 19 6 -2.8603 5.7095 -2.7143 20 6 -3.8741 4.8355 -2.3441 21 9 -5.1464 5.2739 -2.2249 22 6 -3.5637 3.5089 -2.0992 23 7 -2.3238 3.0747 -2.2144 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8788 0.5739 0.4635 30 1 2.2909 2.1165 -1.9977 31 1 0.7551 4.1435 -2.8892 32 1 0.1004 2.6015 -3.4908 33 1 -0.7560 5.8673 -3.1008 34 1 -3.0717 6.7501 -2.9114 35 1 -4.3454 2.8220 -1.8104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798302456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:40 Heat of formation + Delta-G solvation = -77.504395 kcal Electronic energy + Delta-G solvation = -19836.911586 eV Core-core repulsion = 16555.272326 eV Total energy + Delta-G solvation = -3281.639260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -49.98616 -41.40965 -40.25338 -36.99955 -34.42708 -33.90004 -33.44933 -32.83278 -29.60146 -28.34845 -24.96210 -24.36803 -23.63555 -22.04122 -21.10993 -19.78708 -18.64412 -18.37564 -17.60732 -17.49537 -16.84967 -16.74901 -16.22073 -15.53077 -15.04459 -14.99579 -14.89117 -14.48602 -14.45140 -14.15108 -13.94738 -13.86006 -13.52815 -13.04516 -12.79360 -12.65675 -12.45170 -12.25787 -11.69834 -11.52020 -11.12923 -10.90646 -10.70201 -10.46402 -10.43486 -9.82265 -9.67708 -8.77087 -6.39827 -0.11451 0.17435 1.46878 1.48923 1.70574 1.93116 2.41753 2.43656 2.82201 2.99685 3.00221 3.30913 3.65738 3.80283 3.91925 4.11077 4.34755 4.37693 4.43237 4.51964 4.59354 4.66253 4.79789 4.89085 4.93221 4.99344 5.11399 5.26203 5.36407 5.58434 5.63560 5.74956 5.76818 6.05965 6.58521 6.91810 6.99006 7.31123 7.60364 8.60391 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.004414 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.213195 B = 6341.317667 C = 6548.055672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 C 0.255 3.745 4 H 0.020 0.980 5 C -0.615 4.615 6 H 0.044 0.956 7 C 0.002 3.998 8 N -0.926 5.926 9 Si 1.066 2.934 10 H -0.276 1.276 11 H -0.257 1.257 12 H -0.281 1.281 13 N -0.707 5.707 14 C 0.503 3.497 15 O -0.571 6.571 16 C -0.086 4.086 17 C 0.118 3.882 18 C -0.130 4.130 19 C -0.105 4.105 20 C 0.031 3.969 21 F -0.136 7.136 22 C 0.063 3.937 23 N -0.464 5.464 24 H 0.050 0.950 25 H 0.032 0.968 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.261 0.739 30 H 0.404 0.596 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 9.326 -11.765 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.149 3.851 4 H 0.037 0.963 5 C -0.653 4.653 6 H 0.062 0.938 7 C -0.200 4.200 8 N -0.560 5.560 9 Si 0.889 3.111 10 H -0.202 1.202 11 H -0.182 1.182 12 H -0.206 1.206 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.451 6.451 16 C -0.126 4.126 17 C -0.020 4.020 18 C -0.149 4.149 19 C -0.131 4.131 20 C 0.010 3.990 21 F -0.115 7.115 22 C -0.095 4.095 23 N -0.172 5.172 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.238 0.762 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.199 0.801 34 H 0.195 0.805 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.352 8.092 -9.328 19.702 hybrid contribution 0.178 1.016 -1.874 2.140 sum -15.174 9.108 -11.202 20.945 Atomic orbital electron populations 1.21721 0.95633 0.99902 1.01383 1.22109 0.95103 0.98694 1.00583 1.18714 0.93252 0.89388 0.83701 0.96254 1.22249 0.91559 1.47702 1.03780 0.93759 1.26637 0.96981 0.91772 1.04612 1.70923 1.11630 1.42854 1.30606 0.83739 0.76019 0.77784 0.73524 1.20186 1.18174 1.20621 1.46065 1.15736 1.56729 1.17105 1.20898 0.81334 0.78576 0.90244 1.90685 1.51234 1.60316 1.42848 1.20718 0.92367 1.03474 0.96025 1.21031 0.94413 0.91336 0.95231 1.22243 0.98180 0.95151 0.99356 1.21971 0.91595 1.01779 0.97762 1.18964 0.80303 0.94794 1.04989 1.91502 1.36266 1.89903 1.93783 1.23072 0.94643 0.93296 0.98536 1.67472 0.99757 1.39827 1.10153 0.93088 0.94858 0.92792 0.92749 0.93577 0.92963 0.76158 0.83709 0.85196 0.80100 0.80468 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.53 71.98 0.61 -4.63 16 2 C -0.13 -5.57 5.03 30.59 0.15 -5.41 16 3 C 0.25 11.90 1.78 44.25 0.08 11.98 16 4 H 0.02 1.01 5.99 -2.38 -0.01 1.00 16 5 C -0.62 -32.89 8.97 25.60 0.23 -32.66 16 6 H 0.04 2.47 7.96 -2.91 -0.02 2.45 16 7 C 0.00 0.09 5.25 84.65 0.44 0.54 16 8 N -0.93 -55.42 13.70 21.45 0.29 -55.12 16 9 Si 1.07 50.81 26.33 68.60 1.81 52.62 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.73 5.88 99.48 0.59 -11.15 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 N -0.71 -26.46 5.03 -446.09 -2.24 -28.70 16 14 C 0.50 17.41 6.36 87.66 0.56 17.96 16 15 O -0.57 -24.50 12.47 -3.05 -0.04 -24.53 16 16 C -0.09 -1.91 6.10 29.10 0.18 -1.73 16 17 C 0.12 2.87 5.76 42.55 0.25 3.12 16 18 C -0.13 -2.24 9.71 22.35 0.22 -2.02 16 19 C -0.10 -1.77 10.16 22.51 0.23 -1.54 16 20 C 0.03 0.67 7.35 22.47 0.17 0.83 16 21 F -0.14 -2.90 17.28 44.97 0.78 -2.12 16 22 C 0.06 1.59 11.17 84.73 0.95 2.53 16 23 N -0.46 -13.60 9.22 -183.71 -1.69 -15.30 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 25 H 0.03 1.44 7.88 -2.39 -0.02 1.42 16 26 H 0.05 2.18 5.63 -2.38 -0.01 2.17 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 2.13 5.64 -2.39 -0.01 2.11 16 29 H 0.26 15.56 8.73 -92.71 -0.81 14.75 16 30 H 0.40 12.98 8.53 -92.71 -0.79 12.19 16 31 H 0.15 2.07 7.87 -2.38 -0.02 2.06 16 32 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.18 1.69 7.95 -2.91 -0.02 1.67 16 34 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -71.23 297.02 3.13 -68.10 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.17 Total: 16.09 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.06 Total: -11.02 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.64 Total: -99.13 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.04 Total: -24.53 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.81 Total: 52.62 kcal Total: -71.23 3.13 -68.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798302456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.406 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds