Wall clock time and date at job start Mon Mar 30 2020 04:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38548 * 120.00929 * 2 1 4 4 C 1.40126 * 117.80953 * 180.02562 * 3 2 1 5 5 C 1.48027 * 121.15160 * 179.97438 * 4 3 2 6 6 O 1.21429 * 120.00027 * 0.02562 * 5 4 3 7 7 O 1.34675 * 120.00113 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99948 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46863 * 180.02562 * 8 7 5 10 10 O 1.42896 * 109.47576 * 64.99573 * 9 8 7 11 11 C 1.42901 * 114.00344 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99989 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00198 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99700 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00273 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46804 * 60.00247 * 16 14 12 18 18 H 1.48499 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47106 * 300.00747 * 16 14 12 20 20 C 1.39808 * 117.69546 * 0.02562 * 4 3 2 21 21 N 1.31897 * 119.64883 * 359.97438 * 20 4 3 22 22 N 1.28274 * 122.33639 * 359.97438 * 21 20 4 23 23 H 1.08998 * 109.47449 * 269.98124 * 1 2 3 24 24 H 1.09003 * 109.47200 * 29.97984 * 1 2 3 25 25 H 1.08994 * 109.46855 * 149.97486 * 1 2 3 26 26 H 1.07994 * 121.10039 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46679 * 299.99647 * 8 7 5 28 28 H 1.08998 * 109.47258 * 59.99903 * 8 7 5 29 29 H 1.09004 * 109.47297 * 184.99796 * 9 8 7 30 30 H 1.09005 * 109.46985 * 304.99763 * 9 8 7 31 31 H 1.09006 * 109.46897 * 300.00271 * 11 10 9 32 32 H 1.08994 * 109.46957 * 60.00266 * 11 10 9 33 33 H 0.97006 * 119.99866 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.17241 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1997 0.0000 4 6 3.6002 1.1460 -0.0006 5 6 4.4140 2.3825 -0.0012 6 8 3.8694 3.4678 -0.0007 7 8 5.7584 2.3037 -0.0022 8 6 6.4921 3.5568 -0.0022 9 6 7.9946 3.2680 -0.0041 10 8 8.3535 2.6197 -1.2259 11 6 9.7433 2.3035 -1.3297 12 6 10.0073 1.6273 -2.6503 13 1 9.1950 1.4557 -3.3411 14 6 11.2859 1.2276 -2.9767 15 7 12.2749 1.4361 -2.1352 16 14 11.6132 0.3888 -4.6133 17 1 11.2279 1.2989 -5.7217 18 1 13.0574 0.0603 -4.7212 19 1 10.8142 -0.8601 -4.6979 20 6 4.2020 -0.1160 -0.0016 21 7 3.4482 -1.1983 -0.0016 22 7 2.1667 -1.1419 -0.0001 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6782 2.1453 0.0004 27 1 6.2316 4.1303 -0.8918 28 1 6.2330 4.1295 0.8882 29 1 8.5448 4.2047 0.0855 30 1 8.2410 2.6200 0.8371 31 1 10.3300 3.2200 -1.2674 32 1 10.0255 1.6353 -0.5161 33 1 13.1744 1.1546 -2.3647 34 1 5.2784 -0.2040 -0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:38 Heat of formation + Delta-G solvation = -101.539046 kcal Electronic energy + Delta-G solvation = -18991.591551 eV Core-core repulsion = 15696.537281 eV Total energy + Delta-G solvation = -3295.054270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48975 -41.31999 -38.79537 -37.61243 -35.12224 -34.96054 -34.57244 -31.69574 -29.34919 -29.07828 -26.90129 -25.07176 -24.56363 -23.64277 -22.22768 -19.69260 -18.77556 -18.43209 -18.02413 -17.92880 -17.43467 -17.15577 -16.49392 -16.29598 -16.17124 -15.54360 -14.99229 -14.61941 -14.46848 -14.24219 -13.82462 -13.76564 -13.26785 -13.23039 -12.95323 -12.71885 -12.52414 -12.20063 -12.16102 -11.93841 -11.83723 -11.54688 -11.30204 -10.94108 -10.89499 -10.88439 -10.27656 -8.33025 -6.44990 -1.02510 -0.31636 1.14619 1.26559 1.40168 1.44232 1.52596 2.33530 2.33943 2.84257 3.01246 3.03649 3.08564 3.26750 3.33349 3.65374 3.87729 4.09360 4.12278 4.17544 4.39999 4.50898 4.60869 4.64467 4.76570 4.81290 4.85348 4.95719 5.12975 5.18765 5.26124 5.53470 5.94615 6.35393 6.49899 6.78732 7.26657 7.44416 8.78805 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.003715 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.967443 B = 7535.042268 C = 8412.743610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.068 3.932 3 C -0.038 4.038 4 C -0.126 4.126 5 C 0.519 3.481 6 O -0.511 6.511 7 O -0.347 6.347 8 C 0.079 3.921 9 C 0.051 3.949 10 O -0.409 6.409 11 C 0.209 3.791 12 C -0.552 4.552 13 H 0.060 0.940 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.979 3.021 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.267 1.267 20 C 0.084 3.916 21 N -0.268 5.268 22 N -0.249 5.249 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.192 0.808 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.058 0.942 31 H -0.007 1.007 32 H -0.010 1.010 33 H 0.271 0.729 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.811 1.779 6.704 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.078 4.078 3 C -0.068 4.068 4 C -0.138 4.138 5 C 0.363 3.637 6 O -0.401 6.401 7 O -0.263 6.263 8 C 0.007 3.993 9 C -0.026 4.026 10 O -0.330 6.330 11 C 0.134 3.866 12 C -0.589 4.589 13 H 0.078 0.922 14 C -0.190 4.190 15 N -0.568 5.568 16 Si 0.802 3.198 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.192 1.192 20 C -0.081 4.081 21 N -0.107 5.107 22 N -0.092 5.092 23 H 0.123 0.877 24 H 0.127 0.873 25 H 0.106 0.894 26 H 0.209 0.791 27 H 0.097 0.903 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.080 0.920 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -21.907 0.386 6.591 22.880 hybrid contribution 1.170 1.390 -0.371 1.855 sum -20.736 1.776 6.220 21.722 Atomic orbital electron populations 1.20911 0.83425 1.05862 1.05485 1.23590 1.01367 0.88602 0.94228 1.22884 0.91612 1.02257 0.90002 1.20387 0.94912 0.92603 1.05938 1.20828 0.81654 0.88558 0.72663 1.90820 1.73321 1.29727 1.46216 1.86612 1.18491 1.38275 1.82898 1.23364 0.88813 0.82631 1.04535 1.22688 0.92954 0.98491 0.88448 1.87856 1.27819 1.79335 1.37963 1.19851 0.77017 0.93503 0.96210 1.21367 0.94610 1.39838 1.03114 0.92188 1.25902 0.95069 0.96174 1.01837 1.70045 1.01112 1.47654 1.37951 0.85288 0.77431 0.78911 0.78135 1.19043 1.19917 1.19191 1.24900 1.03696 0.88237 0.91243 1.73111 0.99702 1.27500 1.10371 1.72773 1.01957 1.26742 1.07730 0.87704 0.87333 0.89353 0.79101 0.90314 0.86492 0.89647 0.92333 0.98928 0.99179 0.91986 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 71.24 0.73 -0.06 16 2 C 0.07 1.17 6.86 42.63 0.29 1.47 16 3 C -0.04 -0.67 9.44 22.80 0.22 -0.45 16 4 C -0.13 -2.95 5.92 -19.84 -0.12 -3.07 16 5 C 0.52 13.86 7.93 70.42 0.56 14.42 16 6 O -0.51 -14.43 16.28 20.07 0.33 -14.10 16 7 O -0.35 -10.40 9.56 -53.18 -0.51 -10.91 16 8 C 0.08 2.20 5.85 71.98 0.42 2.62 16 9 C 0.05 1.71 6.33 71.98 0.46 2.17 16 10 O -0.41 -19.35 10.30 -145.56 -1.50 -20.85 16 11 C 0.21 11.45 5.69 71.24 0.41 11.86 16 12 C -0.55 -32.64 9.43 25.60 0.24 -32.40 16 13 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 14 C 0.01 0.52 5.46 84.65 0.46 0.98 16 15 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 16 Si 0.98 44.26 29.54 68.60 2.03 46.29 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 C 0.08 2.17 10.93 85.06 0.93 3.09 16 21 N -0.27 -7.51 11.49 -56.49 -0.65 -8.16 16 22 N -0.25 -6.16 11.40 -47.69 -0.54 -6.71 16 23 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.11 0.35 8.09 -2.39 -0.02 0.33 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.19 2.23 7.80 -2.91 -0.02 2.21 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 31 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 34 H 0.19 4.75 7.71 -2.91 -0.02 4.72 16 Total: -1.00 -72.57 312.04 5.14 -67.43 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.11 Total: 1.31 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.59 Total: 0.62 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -0.91 Total: -69.79 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.68 Total: -45.86 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.57 5.14 -67.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.106 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds