Wall clock time and date at job start Mon Mar 30 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35515 * 117.00447 * 2 1 4 4 C 1.39438 * 120.46671 * 180.02562 * 3 2 1 5 5 C 1.38191 * 118.50250 * 180.02562 * 4 3 2 6 6 N 1.32465 * 119.27591 * 0.02562 * 5 4 3 7 7 C 1.32462 * 120.87995 * 359.97438 * 6 5 4 8 8 N 1.38399 * 119.18696 * 179.97438 * 7 6 5 9 9 N 1.40107 * 119.99441 * 0.02562 * 8 7 6 10 10 C 1.34777 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72974 * 10 9 8 13 13 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 14 14 C 1.52998 * 109.47092 * 300.27576 * 12 10 9 15 15 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 16 16 H 1.08001 * 120.00037 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00214 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99609 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00201 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46807 * 60.00091 * 19 17 15 21 21 H 1.48498 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47057 * 299.99983 * 19 17 15 23 23 N 1.32483 * 121.62985 * 0.26883 * 7 6 5 24 24 H 1.09004 * 109.47024 * 59.99419 * 1 2 3 25 25 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46951 * 299.99673 * 1 2 3 27 27 H 1.07997 * 120.74333 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.36212 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00565 * 180.02562 * 8 7 6 30 30 H 0.97000 * 120.00584 * 0.02562 * 9 8 7 31 31 H 1.09005 * 109.47323 * 180.02562 * 14 12 10 32 32 H 1.09006 * 109.47458 * 299.99989 * 14 12 10 33 33 H 1.09004 * 109.47239 * 60.00118 * 14 12 10 34 34 H 0.97006 * 119.99301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2916 -0.0005 5 6 4.0210 2.5436 0.0000 6 7 3.2483 3.6196 0.0016 7 6 1.9284 3.5086 0.0021 8 7 1.1546 4.6561 0.0042 9 7 1.7691 5.9153 0.0053 10 6 1.0157 7.0327 0.0069 11 8 -0.1942 6.9484 0.0079 12 6 1.6766 8.3871 0.0142 13 1 2.2969 8.4935 -0.8757 14 6 2.5496 8.5218 1.2635 15 6 0.6200 9.4616 0.0216 16 1 -0.4255 9.1909 0.0206 17 6 0.9881 10.7903 0.0296 18 7 2.2613 11.1199 0.0303 19 14 -0.3216 12.1223 0.0379 20 1 -1.1675 11.9770 1.2498 21 1 0.3296 13.4568 0.0453 22 1 -1.1681 11.9918 -1.1752 23 7 1.3305 2.3264 0.0063 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0432 0.3984 -0.0014 28 1 5.0964 2.6438 -0.0008 29 1 0.1870 4.5887 0.0050 30 1 2.7368 5.9828 0.0042 31 1 3.0273 9.5015 1.2691 32 1 1.9292 8.4154 2.1535 33 1 3.3138 7.7445 1.2583 34 1 2.5202 12.0548 0.0363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821481508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:25 Heat of formation + Delta-G solvation = 18.205034 kcal Electronic energy + Delta-G solvation = -19473.038478 eV Core-core repulsion = 16215.469452 eV Total energy + Delta-G solvation = -3257.569026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19590 -39.22083 -38.50771 -35.69567 -33.86198 -33.34169 -31.97503 -30.67515 -28.96792 -27.60010 -25.20317 -23.97213 -23.64751 -22.42422 -20.15540 -19.11395 -18.00903 -17.11392 -16.43182 -16.38322 -15.93957 -15.45316 -15.22616 -14.89171 -14.76345 -14.39265 -14.06845 -13.73577 -13.20578 -12.66504 -12.23454 -12.10561 -11.68523 -11.34692 -11.07822 -11.00193 -10.81607 -10.74661 -10.38239 -10.24493 -10.04524 -9.38108 -9.21513 -9.07336 -8.92662 -8.42489 -7.50433 -6.09503 -4.13741 1.11959 1.19452 1.97693 2.81693 3.33706 3.36470 3.41944 3.47060 3.85220 3.86678 4.20111 4.42182 4.82866 5.02670 5.04097 5.08840 5.23999 5.31422 5.36953 5.44158 5.85474 6.16081 6.55214 6.70111 6.74968 6.79058 6.84948 7.17166 7.36711 7.42968 7.69674 7.88042 8.03795 8.26151 8.28596 8.94340 9.05500 9.51930 10.97992 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.003728 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.784366 B = 7508.479973 C = 8075.957172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.407 3.593 4 C -0.315 4.315 5 C 0.223 3.777 6 N -0.593 5.593 7 C 0.604 3.396 8 N -0.486 5.486 9 N -0.525 5.525 10 C 0.521 3.479 11 O -0.544 6.544 12 C 0.046 3.954 13 H 0.060 0.940 14 C -0.137 4.137 15 C -0.506 4.506 16 H 0.075 0.925 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.626 5.626 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.443 0.557 30 H 0.430 0.570 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.016 0.984 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -19.027 0.212 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.205 6.205 3 C 0.218 3.782 4 C -0.343 4.343 5 C 0.058 3.942 6 N -0.321 5.321 7 C 0.246 3.754 8 N -0.214 5.214 9 N -0.278 5.278 10 C 0.311 3.689 11 O -0.417 6.417 12 C 0.023 3.977 13 H 0.078 0.922 14 C -0.195 4.195 15 C -0.544 4.544 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.367 5.367 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.081 0.919 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.288 0.712 30 H 0.272 0.728 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.581 -18.175 0.219 18.359 hybrid contribution -0.369 -0.094 0.007 0.381 sum 2.213 -18.270 0.226 18.405 Atomic orbital electron populations 1.22941 0.76757 1.03142 1.03018 1.86247 1.23386 1.24092 1.86824 1.19665 0.89159 0.83647 0.85688 1.21497 0.92291 1.00937 1.19556 1.22731 0.99982 0.85795 0.85689 1.67862 1.03653 1.34462 1.26098 1.18469 0.85373 0.83971 0.87614 1.42717 1.07340 0.94285 1.77066 1.45815 1.09869 0.93297 1.78780 1.22702 0.88059 0.84841 0.73316 1.90562 1.14847 1.86682 1.49649 1.18892 0.96492 0.84794 0.97513 0.92217 1.21815 0.97643 1.03020 0.96990 1.21060 0.93212 0.89297 1.50845 0.90651 1.24938 0.95677 0.98607 0.94845 1.69861 1.14962 1.17909 1.50580 0.86448 0.81396 0.80093 0.78870 1.20139 1.21295 1.20135 1.67152 1.41415 0.97576 1.30568 0.91929 0.88399 0.91908 0.83440 0.80726 0.71207 0.72762 0.88420 0.94732 0.96482 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.41 101.05 1.05 1.37 16 2 O -0.30 -3.37 10.49 -18.24 -0.19 -3.56 16 3 C 0.41 5.17 7.53 -16.72 -0.13 5.05 16 4 C -0.32 -3.32 10.12 -39.15 -0.40 -3.72 16 5 C 0.22 2.40 11.28 -17.30 -0.20 2.20 16 6 N -0.59 -8.49 9.38 -14.00 -0.13 -8.62 16 7 C 0.60 9.47 8.54 -322.87 -2.76 6.72 16 8 N -0.49 -8.33 6.42 29.75 0.19 -8.14 16 9 N -0.53 -9.73 6.17 31.22 0.19 -9.54 16 10 C 0.52 11.70 7.27 -10.98 -0.08 11.62 16 11 O -0.54 -13.73 15.30 5.55 0.08 -13.65 16 12 C 0.05 1.11 2.64 -92.92 -0.25 0.87 16 13 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 14 C -0.14 -3.06 8.86 37.16 0.33 -2.73 16 15 C -0.51 -13.98 8.37 -34.44 -0.29 -14.27 16 16 H 0.08 2.19 6.75 -52.49 -0.35 1.84 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.47 11.32 55.43 0.63 -23.85 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 N -0.63 -9.09 9.40 -13.99 -0.13 -9.22 16 24 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.18 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.44 7.62 8.11 -182.59 -1.48 6.14 16 30 H 0.43 7.32 7.32 -182.59 -1.34 5.98 16 31 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.02 0.31 7.56 -51.93 -0.39 -0.08 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -31.07 300.54 -8.62 -39.69 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.97 Total: 7.30 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.80 Total: 8.66 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.75 Total: -59.36 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.11 Total: -17.21 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.07 -8.62 -39.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821481508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.896 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds