Wall clock time and date at job start Mon Mar 30 2020 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35515 * 117.00447 * 2 1 4 4 C 1.39438 * 120.46671 * 180.02562 * 3 2 1 5 5 C 1.38191 * 118.50250 * 180.02562 * 4 3 2 6 6 N 1.32465 * 119.27591 * 0.02562 * 5 4 3 7 7 C 1.32462 * 120.87995 * 359.97438 * 6 5 4 8 8 N 1.38399 * 119.18696 * 179.97438 * 7 6 5 9 9 N 1.40107 * 119.99441 * 0.02562 * 8 7 6 10 10 C 1.34777 * 119.99521 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72974 * 10 9 8 13 13 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 14 14 C 1.52998 * 109.47092 * 300.27576 * 12 10 9 15 15 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 16 16 H 1.08001 * 120.00037 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00214 * 179.97438 * 15 12 10 18 18 N 1.31520 * 119.99609 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00201 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46807 * 60.00091 * 19 17 15 21 21 H 1.48498 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47057 * 299.99983 * 19 17 15 23 23 N 1.32483 * 121.62985 * 0.26883 * 7 6 5 24 24 H 1.09004 * 109.47024 * 59.99419 * 1 2 3 25 25 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46951 * 299.99673 * 1 2 3 27 27 H 1.07997 * 120.74333 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.36212 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00565 * 180.02562 * 8 7 6 30 30 H 0.97000 * 120.00584 * 0.02562 * 9 8 7 31 31 H 1.09005 * 109.47323 * 180.02562 * 14 12 10 32 32 H 1.09006 * 109.47458 * 299.99989 * 14 12 10 33 33 H 1.09004 * 109.47239 * 60.00118 * 14 12 10 34 34 H 0.97006 * 119.99301 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2916 -0.0005 5 6 4.0210 2.5436 0.0000 6 7 3.2483 3.6196 0.0016 7 6 1.9284 3.5086 0.0021 8 7 1.1546 4.6561 0.0042 9 7 1.7691 5.9153 0.0053 10 6 1.0157 7.0327 0.0069 11 8 -0.1942 6.9484 0.0079 12 6 1.6766 8.3871 0.0142 13 1 2.2969 8.4935 -0.8757 14 6 2.5496 8.5218 1.2635 15 6 0.6200 9.4616 0.0216 16 1 -0.4255 9.1909 0.0206 17 6 0.9881 10.7903 0.0296 18 7 2.2613 11.1199 0.0303 19 14 -0.3216 12.1223 0.0379 20 1 -1.1675 11.9770 1.2498 21 1 0.3296 13.4568 0.0453 22 1 -1.1681 11.9918 -1.1752 23 7 1.3305 2.3264 0.0063 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0432 0.3984 -0.0014 28 1 5.0964 2.6438 -0.0008 29 1 0.1870 4.5887 0.0050 30 1 2.7368 5.9828 0.0042 31 1 3.0273 9.5015 1.2691 32 1 1.9292 8.4154 2.1535 33 1 3.3138 7.7445 1.2583 34 1 2.5202 12.0548 0.0363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821481508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:25 Heat of formation + Delta-G solvation = -3.420008 kcal Electronic energy + Delta-G solvation = -19473.976210 eV Core-core repulsion = 16215.469452 eV Total energy + Delta-G solvation = -3258.506758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.21148 -40.79285 -39.53152 -37.09892 -35.82954 -34.41807 -33.37862 -32.29596 -30.31582 -28.39127 -27.20679 -25.12876 -24.83148 -23.91443 -21.74783 -20.24460 -19.21628 -18.52798 -18.05415 -17.62121 -17.30880 -16.81442 -16.34453 -16.28045 -16.11568 -15.57745 -15.48126 -15.01948 -14.61243 -14.49834 -13.61685 -13.12762 -12.98058 -12.92781 -12.73542 -12.61445 -12.48896 -12.22368 -12.03999 -11.94871 -11.37301 -11.07908 -10.79210 -10.45447 -10.40676 -10.30526 -8.81061 -8.15655 -6.26552 0.13985 0.22125 0.63843 1.44389 1.45177 1.54060 1.73050 1.97594 2.43350 2.69174 2.82346 3.14685 3.19928 3.80369 4.03454 4.23770 4.37148 4.38533 4.46873 4.59733 4.72861 4.73565 4.91684 4.97656 5.22031 5.42512 5.54233 5.72355 5.76470 5.89188 6.08746 6.18514 6.23177 6.60891 6.81427 7.06536 7.38691 7.48844 8.90178 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.003728 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.784366 B = 7508.479973 C = 8075.957172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.303 6.303 3 C 0.387 3.613 4 C -0.296 4.296 5 C 0.220 3.780 6 N -0.609 5.609 7 C 0.589 3.411 8 N -0.499 5.499 9 N -0.506 5.506 10 C 0.525 3.475 11 O -0.580 6.580 12 C 0.042 3.958 13 H 0.053 0.947 14 C -0.124 4.124 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.275 1.275 22 H -0.276 1.276 23 N -0.637 5.637 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.055 0.945 27 H 0.182 0.818 28 H 0.220 0.780 29 H 0.439 0.561 30 H 0.438 0.562 31 H 0.077 0.923 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -20.643 0.326 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.206 6.206 3 C 0.199 3.801 4 C -0.323 4.323 5 C 0.057 3.943 6 N -0.338 5.338 7 C 0.231 3.769 8 N -0.229 5.229 9 N -0.256 5.256 10 C 0.314 3.686 11 O -0.457 6.457 12 C 0.019 3.981 13 H 0.071 0.929 14 C -0.182 4.182 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.202 1.202 23 N -0.379 5.379 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.073 0.927 27 H 0.199 0.801 28 H 0.236 0.764 29 H 0.283 0.717 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.065 -19.877 0.333 20.291 hybrid contribution -0.714 0.178 -0.044 0.737 sum 3.351 -19.699 0.289 19.984 Atomic orbital electron populations 1.23132 0.75621 1.05116 1.02283 1.86261 1.24515 1.23211 1.86647 1.20132 0.90265 0.83540 0.86153 1.21961 0.91594 1.02232 1.16469 1.23526 1.01593 0.84938 0.84236 1.67897 1.03155 1.36279 1.26429 1.18512 0.85927 0.83727 0.88695 1.42640 1.07244 0.93771 1.79255 1.45201 1.09766 0.93733 1.76924 1.22156 0.87462 0.85424 0.73572 1.90537 1.16172 1.87253 1.51707 1.18779 0.95905 0.85420 0.97954 0.92939 1.21636 0.97838 1.03082 0.95627 1.21215 0.93029 0.90953 1.51913 0.92951 1.25563 0.97541 1.00155 0.94389 1.69936 1.15915 1.18435 1.50400 0.85621 0.79268 0.78217 0.78582 1.20177 1.19953 1.20192 1.67066 1.42304 0.97811 1.30712 0.92658 0.85106 0.92655 0.80087 0.76407 0.71686 0.71763 0.90432 0.95563 0.92900 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.41 113.37 1.18 1.71 16 2 O -0.30 -6.15 10.49 -88.17 -0.93 -7.08 16 3 C 0.39 9.07 7.53 84.85 0.64 9.71 16 4 C -0.30 -5.22 10.12 22.55 0.23 -5.00 16 5 C 0.22 3.97 11.28 84.59 0.95 4.92 16 6 N -0.61 -16.27 9.38 -198.21 -1.86 -18.12 16 7 C 0.59 18.04 8.54 261.51 2.23 20.27 16 8 N -0.50 -17.18 6.42 -59.78 -0.38 -17.56 16 9 N -0.51 -18.71 6.17 -173.53 -1.07 -19.78 16 10 C 0.52 24.00 7.27 87.66 0.64 24.64 16 11 O -0.58 -30.22 15.30 -3.04 -0.05 -30.27 16 12 C 0.04 2.07 2.64 -12.29 -0.03 2.04 16 13 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 14 C -0.12 -5.51 8.86 71.98 0.64 -4.88 16 15 C -0.53 -30.14 8.37 25.60 0.21 -29.92 16 16 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 17 C 0.02 1.28 5.30 84.65 0.45 1.73 16 18 N -0.91 -49.74 11.32 21.45 0.24 -49.50 16 19 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 N -0.64 -18.03 9.40 -310.88 -2.92 -20.95 16 24 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 25 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 27 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.22 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.44 15.56 8.11 -213.32 -1.73 13.83 16 30 H 0.44 14.54 7.32 -213.32 -1.56 12.97 16 31 H 0.08 3.79 6.07 -2.38 -0.01 3.78 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 33 H 0.05 1.92 7.56 -2.38 -0.02 1.90 16 34 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -67.90 300.54 0.07 -67.84 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -2.14 Total: 24.07 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 7.14 Total: 25.22 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.99 Total: -125.91 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.97 Total: -37.35 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.90 0.07 -67.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821481508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.416 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds