Wall clock time and date at job start Mon Mar 30 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35511 * 116.99392 * 2 1 4 4 C 1.39450 * 120.46124 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50397 * 180.02562 * 4 3 2 6 6 N 1.32463 * 119.27078 * 0.02562 * 5 4 3 7 7 C 1.32467 * 120.88836 * 0.02562 * 6 5 4 8 8 N 1.38394 * 119.18865 * 179.97438 * 7 6 5 9 9 N 1.40095 * 119.99968 * 359.97438 * 8 7 6 10 10 C 1.34774 * 120.00101 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99971 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00164 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.46456 * 299.99542 * 12 10 9 14 14 C 1.52997 * 109.47238 * 59.99708 * 12 10 9 15 15 C 1.50697 * 109.47178 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99524 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00267 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.46589 * 89.99875 * 19 17 15 21 21 H 1.48490 * 109.47303 * 209.99928 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00523 * 19 17 15 23 23 N 1.32492 * 121.62298 * 0.24946 * 7 6 5 24 24 H 1.09003 * 109.47477 * 299.99981 * 1 2 3 25 25 H 1.08996 * 109.46992 * 60.00525 * 1 2 3 26 26 H 1.09009 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.74525 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.36148 * 180.02562 * 5 4 3 29 29 H 0.96997 * 119.99677 * 179.97438 * 8 7 6 30 30 H 0.97005 * 120.00103 * 0.02562 * 9 8 7 31 31 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 32 32 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 33 33 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 34 34 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0209 2.5440 0.0011 6 7 3.2480 3.6198 0.0016 7 6 1.9280 3.5088 0.0021 8 7 1.1543 4.6563 0.0031 9 7 1.7686 5.9153 0.0042 10 6 1.0151 7.0328 0.0057 11 8 -0.1948 6.9484 0.0057 12 6 1.6759 8.3872 0.0062 13 1 2.2977 8.4877 0.8958 14 6 2.5468 8.5304 -1.2435 15 6 0.6193 9.4617 0.0086 16 1 -0.4262 9.1909 0.0092 17 6 0.9873 10.7905 0.0101 18 7 0.0651 11.7281 0.0116 19 14 2.7955 11.2589 0.0097 20 1 3.2739 11.3846 -1.3905 21 1 2.9711 12.5558 0.7112 22 1 3.5791 10.2083 0.7080 23 7 1.3303 2.3264 0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 4.0432 0.3987 0.0005 28 1 5.0962 2.6442 0.0011 29 1 0.1867 4.5887 0.0031 30 1 2.7363 5.9829 0.0038 31 1 3.0251 9.5098 -1.2429 32 1 1.9249 8.4299 -2.1331 33 1 3.3111 7.7532 -1.2448 34 1 0.3240 12.6629 0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821481523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:28 Heat of formation + Delta-G solvation = 28.279790 kcal Electronic energy + Delta-G solvation = -19537.695486 eV Core-core repulsion = 16280.563334 eV Total energy + Delta-G solvation = -3257.132152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26318 -39.36360 -38.59276 -35.80968 -33.97873 -33.41044 -32.09702 -31.21884 -29.26696 -27.64855 -25.21671 -24.06095 -23.82831 -22.58555 -20.24065 -19.15227 -18.07285 -17.17030 -16.85703 -16.43890 -16.18409 -15.50867 -15.22330 -14.98739 -14.86725 -14.60318 -14.22363 -13.80387 -13.36079 -12.92273 -12.36651 -12.26938 -12.14167 -11.76855 -11.48464 -11.08260 -11.05103 -10.70023 -10.40394 -10.32739 -9.70262 -9.45490 -9.29320 -9.19268 -9.06200 -8.64160 -7.60765 -6.11218 -4.13212 1.05099 1.12747 1.86710 2.76698 3.20417 3.27803 3.32063 3.34352 3.76499 3.77649 4.12889 4.32738 4.76719 4.94171 4.99481 5.05983 5.17653 5.22382 5.30932 5.39782 5.58201 6.04414 6.05853 6.18648 6.32081 6.57661 6.67965 6.74315 7.05954 7.10842 7.29848 7.44989 7.92229 8.17592 8.45481 8.90176 9.07063 9.45891 11.01311 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040218 B = 0.003973 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.036931 B = 7045.824457 C = 7645.256838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.301 6.301 3 C 0.408 3.592 4 C -0.314 4.314 5 C 0.223 3.777 6 N -0.595 5.595 7 C 0.605 3.395 8 N -0.485 5.485 9 N -0.526 5.526 10 C 0.529 3.471 11 O -0.528 6.528 12 C 0.013 3.987 13 H 0.060 0.940 14 C -0.149 4.149 15 C -0.511 4.511 16 H 0.095 0.905 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.884 3.116 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.265 1.265 23 N -0.624 5.624 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.444 0.556 30 H 0.429 0.571 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -21.265 -0.405 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.205 6.205 3 C 0.219 3.781 4 C -0.342 4.342 5 C 0.058 3.942 6 N -0.323 5.323 7 C 0.247 3.753 8 N -0.214 5.214 9 N -0.279 5.279 10 C 0.318 3.682 11 O -0.400 6.400 12 C -0.011 4.011 13 H 0.077 0.923 14 C -0.207 4.207 15 C -0.549 4.549 16 H 0.113 0.887 17 C -0.129 4.129 18 N -0.530 5.530 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.190 1.190 23 N -0.366 5.366 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.290 0.710 30 H 0.271 0.729 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.317 -20.381 -0.393 21.658 hybrid contribution 1.205 -0.380 -0.056 1.265 sum 8.522 -20.760 -0.449 22.446 Atomic orbital electron populations 1.22956 0.76660 1.03216 1.03064 1.86252 1.23464 1.24020 1.86749 1.19671 0.89155 0.83658 0.85584 1.21513 0.92318 1.00953 1.19368 1.22720 0.99954 0.85806 0.85736 1.67844 1.03663 1.34521 1.26257 1.18446 0.85331 0.83963 0.87606 1.42660 1.07370 0.94023 1.77303 1.45648 1.09720 0.93560 1.78943 1.21905 0.87951 0.84268 0.74084 1.90618 1.14498 1.86371 1.48515 1.19293 0.97150 0.88243 0.96391 0.92263 1.22185 0.98536 1.00236 0.99715 1.20876 0.94219 0.88269 1.51514 0.88711 1.24950 0.97264 0.96213 0.94504 1.69873 1.32885 1.00320 1.49898 0.86918 0.85986 0.77723 0.78016 1.20337 1.22172 1.19024 1.67152 1.41416 0.97555 1.30452 0.91855 0.91883 0.88346 0.83390 0.80732 0.71024 0.72880 0.92851 0.92081 0.94425 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.23 10.49 -18.23 -0.19 -3.43 16 3 C 0.41 4.96 7.53 -16.71 -0.13 4.83 16 4 C -0.31 -3.12 10.12 -39.14 -0.40 -3.52 16 5 C 0.22 2.22 11.29 -17.29 -0.20 2.03 16 6 N -0.59 -7.99 9.38 -14.00 -0.13 -8.12 16 7 C 0.60 9.01 8.54 -322.86 -2.76 6.25 16 8 N -0.49 -7.89 6.42 29.75 0.19 -7.70 16 9 N -0.53 -9.11 6.17 31.22 0.19 -8.91 16 10 C 0.53 11.34 7.27 -10.98 -0.08 11.26 16 11 O -0.53 -13.15 15.30 5.56 0.08 -13.07 16 12 C 0.01 0.28 2.23 -92.92 -0.21 0.08 16 13 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 14 C -0.15 -2.96 8.57 37.16 0.32 -2.64 16 15 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 16 H 0.09 3.04 7.00 -52.49 -0.37 2.67 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 18 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 19 Si 0.88 20.66 24.37 -169.99 -4.14 16.52 16 20 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -5.72 6.53 56.52 0.37 -5.35 16 23 N -0.62 -8.69 9.40 -13.98 -0.13 -8.83 16 24 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 25 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.44 7.32 8.11 -182.60 -1.48 5.84 16 30 H 0.43 6.60 7.33 -182.60 -1.34 5.26 16 31 H 0.05 1.10 3.28 -51.93 -0.17 0.93 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.59 7.57 -51.93 -0.39 0.20 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -33.23 293.76 -7.56 -40.79 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.84 Total: 7.63 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -2.80 Total: 6.94 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.89 Total: -59.82 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.11 Total: -16.49 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.14 Total: 16.52 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.23 -7.56 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821481523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.071 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds