Wall clock time and date at job start Mon Mar 30 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35511 * 116.99392 * 2 1 4 4 C 1.39450 * 120.46124 * 179.97438 * 3 2 1 5 5 C 1.38200 * 118.50397 * 180.02562 * 4 3 2 6 6 N 1.32463 * 119.27078 * 0.02562 * 5 4 3 7 7 C 1.32467 * 120.88836 * 0.02562 * 6 5 4 8 8 N 1.38394 * 119.18865 * 179.97438 * 7 6 5 9 9 N 1.40095 * 119.99968 * 359.97438 * 8 7 6 10 10 C 1.34774 * 120.00101 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99971 * 359.97438 * 10 9 8 12 12 C 1.50706 * 120.00164 * 180.02562 * 10 9 8 13 13 H 1.08998 * 109.46456 * 299.99542 * 12 10 9 14 14 C 1.52997 * 109.47238 * 59.99708 * 12 10 9 15 15 C 1.50697 * 109.47178 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99524 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00267 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.46589 * 89.99875 * 19 17 15 21 21 H 1.48490 * 109.47303 * 209.99928 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00523 * 19 17 15 23 23 N 1.32492 * 121.62298 * 0.24946 * 7 6 5 24 24 H 1.09003 * 109.47477 * 299.99981 * 1 2 3 25 25 H 1.08996 * 109.46992 * 60.00525 * 1 2 3 26 26 H 1.09009 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.74525 * 0.02562 * 4 3 2 28 28 H 1.07995 * 120.36148 * 180.02562 * 5 4 3 29 29 H 0.96997 * 119.99677 * 179.97438 * 8 7 6 30 30 H 0.97005 * 120.00103 * 0.02562 * 9 8 7 31 31 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 32 32 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 33 33 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 34 34 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4360 1.2918 0.0005 5 6 4.0209 2.5440 0.0011 6 7 3.2480 3.6198 0.0016 7 6 1.9280 3.5088 0.0021 8 7 1.1543 4.6563 0.0031 9 7 1.7686 5.9153 0.0042 10 6 1.0151 7.0328 0.0057 11 8 -0.1948 6.9484 0.0057 12 6 1.6759 8.3872 0.0062 13 1 2.2977 8.4877 0.8958 14 6 2.5468 8.5304 -1.2435 15 6 0.6193 9.4617 0.0086 16 1 -0.4262 9.1909 0.0092 17 6 0.9873 10.7905 0.0101 18 7 0.0651 11.7281 0.0116 19 14 2.7955 11.2589 0.0097 20 1 3.2739 11.3846 -1.3905 21 1 2.9711 12.5558 0.7112 22 1 3.5791 10.2083 0.7080 23 7 1.3303 2.3264 0.0070 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 4.0432 0.3987 0.0005 28 1 5.0962 2.6442 0.0011 29 1 0.1867 4.5887 0.0031 30 1 2.7363 5.9829 0.0038 31 1 3.0251 9.5098 -1.2429 32 1 1.9249 8.4299 -2.1331 33 1 3.3111 7.7532 -1.2448 34 1 0.3240 12.6629 0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821481523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:28 Heat of formation + Delta-G solvation = 2.118318 kcal Electronic energy + Delta-G solvation = -19538.829933 eV Core-core repulsion = 16280.563334 eV Total energy + Delta-G solvation = -3258.266598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21599 -40.88493 -39.54394 -37.14011 -35.87116 -34.43230 -33.66790 -32.71160 -30.47789 -28.39633 -27.12383 -25.31786 -24.85174 -23.95445 -21.75714 -20.22810 -19.23519 -18.83078 -18.25812 -17.65165 -17.31425 -16.83671 -16.40039 -16.31609 -16.23376 -15.57483 -15.54497 -15.12145 -14.67763 -14.60856 -14.07718 -13.58347 -13.20077 -12.93235 -12.83902 -12.56234 -12.47955 -12.16094 -11.96566 -11.45925 -11.38472 -11.24553 -10.85744 -10.69820 -10.41631 -10.31821 -8.83110 -8.26287 -6.35783 0.13798 0.22010 0.60302 1.37954 1.44566 1.55561 1.66245 1.97635 2.36704 2.63660 2.82106 3.07351 3.19100 3.70316 3.99596 4.15578 4.36714 4.37661 4.39293 4.45136 4.57442 4.59305 4.72467 4.73478 4.98453 5.21463 5.42298 5.44379 5.54271 5.76267 6.02963 6.19576 6.28203 6.57469 6.79385 7.04469 7.26589 7.44296 8.91014 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040218 B = 0.003973 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.036931 B = 7045.824457 C = 7645.256838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.303 6.303 3 C 0.386 3.614 4 C -0.297 4.297 5 C 0.221 3.779 6 N -0.606 5.606 7 C 0.590 3.410 8 N -0.499 5.499 9 N -0.502 5.502 10 C 0.530 3.470 11 O -0.577 6.577 12 C 0.010 3.990 13 H 0.081 0.919 14 C -0.144 4.144 15 C -0.525 4.525 16 H 0.032 0.968 17 C 0.009 3.991 18 N -0.951 5.951 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.301 1.301 22 H -0.225 1.225 23 N -0.639 5.639 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.130 0.870 27 H 0.181 0.819 28 H 0.221 0.779 29 H 0.439 0.561 30 H 0.441 0.559 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 -23.520 -0.526 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.207 6.207 3 C 0.199 3.801 4 C -0.323 4.323 5 C 0.058 3.942 6 N -0.335 5.335 7 C 0.232 3.768 8 N -0.230 5.230 9 N -0.253 5.253 10 C 0.319 3.681 11 O -0.453 6.453 12 C -0.013 4.013 13 H 0.099 0.901 14 C -0.201 4.201 15 C -0.563 4.563 16 H 0.051 0.949 17 C -0.188 4.188 18 N -0.590 5.590 19 Si 0.782 3.218 20 H -0.185 1.185 21 H -0.228 1.228 22 H -0.148 1.148 23 N -0.381 5.381 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.198 0.802 28 H 0.238 0.762 29 H 0.283 0.717 30 H 0.286 0.714 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.655 -22.756 -0.518 25.573 hybrid contribution -0.177 0.083 -0.003 0.196 sum 11.478 -22.673 -0.521 25.418 Atomic orbital electron populations 1.23127 0.75643 1.05096 1.02272 1.86261 1.24484 1.23305 1.86626 1.20147 0.90299 0.83506 0.86172 1.21980 0.91525 1.02352 1.16428 1.23539 1.01619 0.84864 0.84135 1.67886 1.02956 1.36179 1.26444 1.18496 0.85954 0.83640 0.88681 1.42627 1.07274 0.93718 1.79384 1.45030 1.09738 0.93657 1.76904 1.21592 0.87273 0.85160 0.74103 1.90604 1.16531 1.87065 1.51124 1.19206 0.96124 0.87197 0.98775 0.90143 1.22094 0.98882 1.01875 0.97278 1.21023 0.93172 0.90600 1.51532 0.94936 1.26010 1.03442 0.95689 0.93621 1.70069 1.36214 1.00914 1.51841 0.85736 0.78888 0.77887 0.79286 1.18453 1.22849 1.14810 1.67059 1.42428 0.97902 1.30678 0.92665 0.92667 0.85162 0.80158 0.76219 0.71713 0.71405 0.92971 0.93234 0.89502 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.41 113.37 1.18 1.70 16 2 O -0.30 -5.92 10.49 -88.13 -0.92 -6.85 16 3 C 0.39 8.59 7.53 84.85 0.64 9.23 16 4 C -0.30 -4.76 10.12 22.55 0.23 -4.53 16 5 C 0.22 3.48 11.29 84.59 0.95 4.44 16 6 N -0.61 -14.50 9.38 -198.21 -1.86 -16.36 16 7 C 0.59 16.83 8.54 261.51 2.23 19.06 16 8 N -0.50 -16.16 6.42 -59.77 -0.38 -16.55 16 9 N -0.50 -16.82 6.17 -173.53 -1.07 -17.89 16 10 C 0.53 22.92 7.27 87.66 0.64 23.55 16 11 O -0.58 -30.29 15.30 -3.04 -0.05 -30.34 16 12 C 0.01 0.45 2.23 -12.29 -0.03 0.42 16 13 H 0.08 3.24 7.20 -2.39 -0.02 3.23 16 14 C -0.14 -5.28 8.57 71.98 0.62 -4.66 16 15 C -0.52 -30.67 8.96 25.60 0.23 -30.44 16 16 H 0.03 2.25 7.00 -2.91 -0.02 2.23 16 17 C 0.01 0.53 5.45 84.65 0.46 1.00 16 18 N -0.95 -60.14 13.96 21.45 0.30 -59.85 16 19 Si 0.96 41.60 24.37 68.60 1.67 43.27 16 20 H -0.26 -10.49 6.87 99.48 0.68 -9.81 16 21 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.23 -8.30 6.53 99.48 0.65 -7.65 16 23 N -0.64 -17.24 9.40 -310.87 -2.92 -20.16 16 24 H 0.05 0.94 8.11 -2.39 -0.02 0.93 16 25 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 26 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 29 H 0.44 15.02 8.11 -213.33 -1.73 13.29 16 30 H 0.44 12.33 7.33 -213.32 -1.56 10.76 16 31 H 0.05 1.94 3.28 -2.39 -0.01 1.93 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.33 7.57 -2.38 -0.02 2.31 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -78.21 293.76 -0.30 -78.51 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -2.21 Total: 26.44 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.15 Total: 19.76 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -5.94 Total: -130.80 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.97 Total: -37.18 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.67 Total: 43.27 kcal Total: -78.21 -0.30 -78.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821481523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.628 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds