Wall clock time and date at job start Mon Mar 30 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30449 * 125.99307 * 2 1 4 4 N 1.39931 * 108.90106 * 179.97438 * 3 2 1 5 5 H 0.96999 * 125.75768 * 180.02562 * 4 3 2 6 6 C 1.34256 * 108.49141 * 359.73111 * 4 3 2 7 7 C 1.38051 * 107.41642 * 0.42477 * 6 4 3 8 8 C 1.47425 * 126.41563 * 179.83367 * 7 6 4 9 9 O 1.21603 * 120.00315 * 179.69386 * 8 7 6 10 10 N 1.34783 * 120.00083 * 359.69178 * 8 7 6 11 11 N 1.40094 * 119.99879 * 179.97438 * 10 8 7 12 12 C 1.34783 * 119.99879 * 180.02562 * 11 10 8 13 13 O 1.21274 * 119.99740 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00008 * 180.02562 * 12 11 10 15 15 H 1.08997 * 109.47655 * 300.00593 * 14 12 11 16 16 C 1.53005 * 109.46714 * 60.00605 * 14 12 11 17 17 C 1.50701 * 109.47288 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99347 * 354.48283 * 17 14 12 19 19 C 1.37871 * 120.00267 * 174.47686 * 17 14 12 20 20 N 1.31515 * 120.00275 * 164.60227 * 19 17 14 21 21 Si 1.86805 * 120.00132 * 344.88100 * 19 17 14 22 22 H 1.48496 * 109.46866 * 269.72707 * 21 19 17 23 23 H 1.48501 * 109.46710 * 29.72494 * 21 19 17 24 24 H 1.48493 * 109.47426 * 149.72060 * 21 19 17 25 25 H 1.09001 * 109.47490 * 270.00685 * 1 2 3 26 26 H 1.09007 * 109.46600 * 29.99754 * 1 2 3 27 27 H 1.08991 * 109.47343 * 149.99863 * 1 2 3 28 28 H 1.08007 * 126.29798 * 180.29722 * 6 4 3 29 29 H 0.96999 * 119.99536 * 0.02562 * 10 8 7 30 30 H 0.96999 * 120.00585 * 0.02562 * 11 10 8 31 31 H 1.08992 * 109.47327 * 53.51941 * 16 14 12 32 32 H 1.09002 * 109.46728 * 173.52497 * 16 14 12 33 33 H 1.09008 * 109.46994 * 293.51357 * 16 14 12 34 34 H 0.97006 * 119.99247 * 355.18806 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2300 0.0011 6 6 3.6439 -0.6980 0.0069 7 6 2.3372 -1.1432 0.0006 8 6 1.8914 -2.5485 0.0007 9 8 0.7038 -2.8097 0.0004 10 7 2.8003 -3.5438 0.0012 11 7 2.3767 -4.8792 0.0019 12 6 3.2855 -5.8745 0.0029 13 8 4.4700 -5.6140 0.0037 14 6 2.8299 -7.3109 0.0030 15 1 2.2295 -7.5017 0.8925 16 6 1.9893 -7.5793 -1.2469 17 6 4.0323 -8.2194 0.0049 18 1 5.0244 -7.8020 -0.0841 19 6 3.8658 -9.5831 0.1202 20 7 4.8574 -10.3942 -0.1773 21 14 2.2292 -10.2793 0.6916 22 1 2.2368 -10.4112 2.1707 23 1 1.1326 -9.3658 0.2817 24 1 2.0173 -11.6142 0.0766 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 4.5297 -1.3159 0.0135 29 1 3.7476 -3.3354 0.0019 30 1 1.4293 -5.0875 0.0016 31 1 2.5493 -7.2798 -2.1327 32 1 1.7562 -8.6425 -1.3066 33 1 1.0631 -7.0070 -1.1917 34 1 5.6819 -10.0380 -0.5439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826753696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:46 Heat of formation + Delta-G solvation = 26.454829 kcal Electronic energy + Delta-G solvation = -19572.945136 eV Core-core repulsion = 16315.733848 eV Total energy + Delta-G solvation = -3257.211288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71318 -39.75652 -38.35236 -35.01670 -33.93795 -33.22253 -32.02784 -31.06011 -29.37861 -28.13017 -24.90355 -23.82504 -22.56870 -21.07564 -20.46394 -19.62404 -18.37413 -17.62849 -17.15363 -16.69708 -15.69574 -15.51459 -14.81788 -14.73078 -14.33367 -13.99141 -13.77082 -13.29052 -13.15893 -13.00409 -12.79169 -12.27202 -11.92793 -11.67580 -11.30977 -11.25901 -10.84362 -10.60423 -10.32427 -10.10232 -9.82642 -9.70208 -9.18605 -9.08662 -8.85028 -8.34432 -7.98270 -6.50170 -4.11072 1.17031 1.87914 2.12742 2.41938 3.14975 3.36792 3.40240 3.47925 3.54589 4.13362 4.31481 4.46426 4.50339 4.84399 5.04893 5.12664 5.22709 5.52447 5.61626 5.70162 5.78639 6.13714 6.22590 6.33409 6.42396 6.72592 6.77363 7.01051 7.02101 7.14738 7.24235 7.69525 8.07693 8.18220 8.42332 8.92773 8.96348 9.58081 10.90769 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040735 B = 0.003969 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.200036 B = 7052.839170 C = 7584.449536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.140 3.860 3 N -0.301 5.301 4 N -0.459 5.459 5 H 0.445 0.555 6 C 0.109 3.891 7 C -0.279 4.279 8 C 0.591 3.409 9 O -0.546 6.546 10 N -0.522 5.522 11 N -0.538 5.538 12 C 0.529 3.471 13 O -0.538 6.538 14 C 0.016 3.984 15 H 0.053 0.947 16 C -0.143 4.143 17 C -0.591 4.591 18 H 0.076 0.924 19 C 0.033 3.967 20 N -0.902 5.902 21 Si 1.039 2.961 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.284 1.284 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.189 0.811 29 H 0.424 0.576 30 H 0.428 0.572 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 19.871 0.090 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 N -0.124 5.124 4 N -0.163 5.163 5 H 0.290 0.710 6 C -0.044 4.044 7 C -0.296 4.296 8 C 0.378 3.622 9 O -0.423 6.423 10 N -0.267 5.267 11 N -0.289 5.289 12 C 0.319 3.681 13 O -0.411 6.411 14 C -0.008 4.008 15 H 0.070 0.930 16 C -0.201 4.201 17 C -0.629 4.629 18 H 0.094 0.906 19 C -0.172 4.172 20 N -0.536 5.536 21 Si 0.867 3.133 22 H -0.212 1.212 23 H -0.195 1.195 24 H -0.210 1.210 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.206 0.794 29 H 0.265 0.735 30 H 0.269 0.731 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.668 19.697 0.461 20.801 hybrid contribution 1.559 0.889 -0.358 1.830 sum -5.109 20.586 0.103 21.211 Atomic orbital electron populations 1.20386 0.85413 1.04263 1.03789 1.22487 0.97488 0.88318 0.94526 1.77192 0.86194 1.22307 1.26679 1.46088 1.07925 1.05410 1.56919 0.70988 1.23273 0.99138 0.85835 0.96204 1.20028 0.92310 0.93546 1.23708 1.17203 0.85356 0.82806 0.76826 1.90750 1.15852 1.83786 1.51937 1.44623 1.10003 0.96437 1.75592 1.45720 1.11167 0.93193 1.78859 1.22054 0.85564 0.86922 0.73609 1.90563 1.17246 1.84077 1.49190 1.19256 0.99069 0.86303 0.96147 0.92950 1.22199 0.97150 1.01832 0.98909 1.21932 0.92614 0.91935 1.56450 0.90573 1.25755 1.04025 0.93192 0.94237 1.70789 1.06192 1.37491 1.39109 0.84179 0.75717 0.76287 0.77141 1.21157 1.19495 1.21002 0.89985 0.90929 0.88364 0.79401 0.73479 0.73057 0.93180 0.91813 0.95019 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.92 36.00 0.36 -0.44 16 2 C 0.14 1.63 7.26 -82.02 -0.60 1.04 16 3 N -0.30 -3.31 12.63 33.89 0.43 -2.88 16 4 N -0.46 -3.56 7.29 30.85 0.22 -3.34 16 5 H 0.45 1.79 8.96 -182.73 -1.64 0.15 16 6 C 0.11 0.90 11.52 -16.56 -0.19 0.71 16 7 C -0.28 -3.27 6.13 -105.07 -0.64 -3.91 16 8 C 0.59 8.42 7.93 -12.52 -0.10 8.32 16 9 O -0.55 -8.98 14.76 5.27 0.08 -8.90 16 10 N -0.52 -7.72 6.25 30.43 0.19 -7.53 16 11 N -0.54 -9.28 6.16 31.22 0.19 -9.09 16 12 C 0.53 11.26 7.26 -10.98 -0.08 11.18 16 13 O -0.54 -13.00 15.31 5.56 0.09 -12.92 16 14 C 0.02 0.36 2.19 -92.92 -0.20 0.15 16 15 H 0.05 1.13 6.77 -51.93 -0.35 0.77 16 16 C -0.14 -2.87 8.32 37.16 0.31 -2.56 16 17 C -0.59 -16.44 8.65 -34.44 -0.30 -16.74 16 18 H 0.08 2.39 7.02 -52.49 -0.37 2.03 16 19 C 0.03 0.93 5.33 -17.82 -0.09 0.84 16 20 N -0.90 -27.31 13.70 55.43 0.76 -26.55 16 21 Si 1.04 23.70 26.17 -169.99 -4.45 19.25 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -5.39 5.53 56.52 0.31 -5.08 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.10 6.55 -51.93 -0.34 0.76 16 28 H 0.19 0.92 7.46 -52.48 -0.39 0.53 16 29 H 0.42 5.62 6.92 -182.60 -1.26 4.36 16 30 H 0.43 6.84 7.55 -182.60 -1.38 5.46 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.31 5.06 -51.93 -0.26 1.05 16 33 H 0.03 0.52 7.75 -51.92 -0.40 0.12 16 34 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -35.40 293.71 -6.51 -41.91 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.91 Total: 7.04 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.54 Total: -1.42 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 1.79 Total: -49.38 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.82 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.45 Total: 19.25 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.40 -6.51 -41.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826753696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.369 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds