Wall clock time and date at job start Mon Mar 30 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30452 * 125.98651 * 2 1 4 4 N 1.39935 * 108.89643 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.75485 * 180.02562 * 4 3 2 6 6 C 1.34256 * 108.49500 * 359.72651 * 4 3 2 7 7 C 1.38051 * 107.41337 * 0.43158 * 6 4 3 8 8 C 1.47431 * 126.41373 * 179.83564 * 7 6 4 9 9 O 1.21600 * 119.99997 * 179.68950 * 8 7 6 10 10 N 1.34776 * 119.99614 * 359.68795 * 8 7 6 11 11 N 1.40105 * 119.99586 * 180.02562 * 10 8 7 12 12 C 1.34774 * 120.00185 * 179.97438 * 11 10 8 13 13 O 1.21280 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00338 * 179.97438 * 12 11 10 15 15 H 1.09007 * 109.46871 * 59.99694 * 14 12 11 16 16 C 1.53000 * 109.47177 * 300.00305 * 14 12 11 17 17 C 1.50694 * 109.47166 * 179.97438 * 14 12 11 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08995 * 109.47722 * 269.97660 * 1 2 3 26 26 H 1.09003 * 109.47326 * 29.98195 * 1 2 3 27 27 H 1.09007 * 109.46527 * 149.97495 * 1 2 3 28 28 H 1.07994 * 126.29899 * 180.29942 * 6 4 3 29 29 H 0.96997 * 120.00646 * 359.97438 * 10 8 7 30 30 H 0.97006 * 119.99563 * 359.97438 * 11 10 8 31 31 H 1.08998 * 109.47089 * 59.99668 * 16 14 12 32 32 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 33 33 H 1.09002 * 109.47106 * 299.99721 * 16 14 12 34 34 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 -0.0006 5 1 4.3842 1.2302 -0.0004 6 6 3.6440 -0.6978 0.0051 7 6 2.3373 -1.1432 -0.0006 8 6 1.8916 -2.5485 -0.0008 9 8 0.7040 -2.8097 -0.0004 10 7 2.8006 -3.5436 -0.0013 11 7 2.3771 -4.8791 -0.0021 12 6 3.2860 -5.8743 -0.0031 13 8 4.4704 -5.6137 -0.0040 14 6 2.8305 -7.3108 -0.0033 15 1 2.2301 -7.5014 -0.8930 16 6 1.9897 -7.5794 1.2464 17 6 4.0329 -8.2190 -0.0053 18 1 5.0276 -7.7983 -0.0058 19 6 3.8633 -9.5874 -0.0063 20 7 2.6521 -10.0999 -0.0051 21 14 5.3539 -10.7132 -0.0094 22 1 4.9051 -12.1288 -0.0095 23 1 6.1691 -10.4519 -1.2227 24 1 6.1725 -10.4541 1.2022 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5143 28 1 4.5298 -1.3156 0.0108 29 1 3.7479 -3.3353 -0.0020 30 1 1.4297 -5.0874 -0.0018 31 1 1.1200 -6.9224 1.2473 32 1 1.6599 -8.6183 1.2460 33 1 2.5900 -7.3888 2.1360 34 1 2.5329 -11.0625 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826753702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:49 Heat of formation + Delta-G solvation = 24.777769 kcal Electronic energy + Delta-G solvation = -19510.837422 eV Core-core repulsion = 16253.553411 eV Total energy + Delta-G solvation = -3257.284011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65818 -39.63259 -38.22137 -34.90578 -33.84564 -33.16968 -31.87809 -30.61998 -29.13812 -28.06567 -25.19396 -23.73947 -22.59230 -20.98573 -20.48545 -19.63485 -18.34169 -17.36806 -16.62932 -16.06308 -15.61016 -15.38320 -14.68980 -14.66145 -14.51100 -13.98902 -13.79611 -13.17388 -13.10299 -12.95395 -12.59321 -12.21863 -11.67358 -11.20846 -11.06687 -10.92953 -10.74772 -10.74021 -10.31274 -10.11210 -9.96070 -9.77576 -9.12869 -9.06500 -8.89253 -8.41750 -7.86502 -6.08596 -4.12999 1.22582 1.93471 2.23030 2.48051 3.25585 3.33379 3.36459 3.41416 3.61276 4.19374 4.36454 4.39939 4.63267 4.89787 5.13594 5.18935 5.24793 5.57501 5.67664 5.83790 5.95930 6.28193 6.57796 6.76821 6.77417 6.83026 7.08717 7.13611 7.28813 7.41866 7.71441 7.89554 8.05617 8.25992 8.32024 8.94754 9.07031 9.52546 10.98894 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043164 B = 0.003754 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.535213 B = 7456.206080 C = 8013.223014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.140 3.860 3 N -0.301 5.301 4 N -0.460 5.460 5 H 0.445 0.555 6 C 0.108 3.892 7 C -0.278 4.278 8 C 0.590 3.410 9 O -0.546 6.546 10 N -0.522 5.522 11 N -0.537 5.537 12 C 0.523 3.477 13 O -0.548 6.548 14 C 0.042 3.958 15 H 0.060 0.940 16 C -0.137 4.137 17 C -0.505 4.505 18 H 0.075 0.925 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.189 0.811 29 H 0.423 0.577 30 H 0.428 0.572 31 H 0.016 0.984 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 18.186 0.290 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 N -0.125 5.125 4 N -0.164 5.164 5 H 0.290 0.710 6 C -0.045 4.045 7 C -0.295 4.295 8 C 0.377 3.623 9 O -0.423 6.423 10 N -0.266 5.266 11 N -0.288 5.288 12 C 0.313 3.687 13 O -0.422 6.422 14 C 0.020 3.980 15 H 0.077 0.923 16 C -0.195 4.195 17 C -0.544 4.544 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.206 0.794 29 H 0.264 0.736 30 H 0.270 0.730 31 H 0.035 0.965 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.845 19.252 0.285 19.272 hybrid contribution 1.415 -1.163 0.032 1.832 sum 0.570 18.089 0.316 18.101 Atomic orbital electron populations 1.20388 0.85425 1.04260 1.03788 1.22488 0.97485 0.88339 0.94525 1.77188 0.86202 1.22323 1.26743 1.46082 1.07903 1.05410 1.57027 0.71040 1.23265 0.99144 0.85804 0.96314 1.20053 0.92287 0.93627 1.23502 1.17195 0.85396 0.82801 0.76954 1.90753 1.15862 1.83773 1.51919 1.44619 1.09918 0.96658 1.75447 1.45778 1.11323 0.92958 1.78763 1.22596 0.85514 0.87512 0.73097 1.90532 1.17358 1.84341 1.49982 1.18893 0.98249 0.83402 0.97471 0.92269 1.21808 0.96480 1.04200 0.96989 1.21049 0.92439 0.90047 1.50837 0.90674 1.24947 0.96227 0.98043 0.94894 1.69860 1.20560 1.12308 1.50537 0.86457 0.82553 0.79021 0.78811 1.21318 1.20159 1.20174 0.89996 0.90961 0.88331 0.79408 0.73576 0.72958 0.96504 0.88482 0.94729 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.92 36.00 0.36 -0.48 16 2 C 0.14 1.68 7.26 -82.02 -0.60 1.09 16 3 N -0.30 -3.41 12.63 33.89 0.43 -2.98 16 4 N -0.46 -3.68 7.29 30.85 0.22 -3.46 16 5 H 0.44 1.87 8.96 -182.72 -1.64 0.23 16 6 C 0.11 0.92 11.52 -16.56 -0.19 0.73 16 7 C -0.28 -3.37 6.13 -105.06 -0.64 -4.01 16 8 C 0.59 8.76 7.93 -12.52 -0.10 8.66 16 9 O -0.55 -9.40 14.76 5.28 0.08 -9.33 16 10 N -0.52 -8.02 6.25 30.43 0.19 -7.83 16 11 N -0.54 -9.74 6.15 31.22 0.19 -9.54 16 12 C 0.52 11.43 7.27 -10.99 -0.08 11.35 16 13 O -0.55 -13.17 15.30 5.56 0.09 -13.08 16 14 C 0.04 1.02 2.64 -92.93 -0.24 0.78 16 15 H 0.06 1.46 8.14 -51.92 -0.42 1.04 16 16 C -0.14 -3.07 8.87 37.16 0.33 -2.74 16 17 C -0.51 -13.81 8.37 -34.44 -0.29 -14.10 16 18 H 0.08 2.15 6.75 -52.49 -0.35 1.79 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.89 -24.46 11.32 55.43 0.63 -23.84 16 21 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 1.15 6.55 -51.92 -0.34 0.81 16 28 H 0.19 0.96 7.46 -52.49 -0.39 0.57 16 29 H 0.42 5.77 6.92 -182.60 -1.26 4.50 16 30 H 0.43 7.43 7.42 -182.59 -1.35 6.08 16 31 H 0.02 0.31 7.56 -51.93 -0.39 -0.08 16 32 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -33.28 298.35 -7.13 -40.41 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.88 Total: 6.15 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.55 Total: 2.80 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 1.66 Total: -47.65 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.16 Total: -22.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.28 -7.13 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826753702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.184 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds