Wall clock time and date at job start Mon Mar 30 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.21283 * 120.00060 * 119.99696 * 12 2 1 14 14 N 1.34781 * 120.00015 * 300.00449 * 12 2 1 15 15 N 1.40097 * 120.00068 * 179.97438 * 14 12 2 16 16 C 1.34768 * 120.00317 * 179.97438 * 15 14 12 17 17 O 1.21609 * 119.99912 * 0.02562 * 16 15 14 18 18 C 1.47432 * 120.00337 * 180.02562 * 16 15 14 19 19 C 1.41286 * 126.41164 * 359.68940 * 18 16 15 20 20 N 1.30450 * 108.01961 * 179.88031 * 19 18 16 21 21 N 1.39935 * 108.89914 * 0.38652 * 20 19 18 22 22 C 1.46495 * 125.75418 * 179.72190 * 21 20 19 23 23 C 1.34255 * 108.48994 * 359.74990 * 21 20 19 24 24 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 28 28 H 0.97001 * 119.99470 * 359.97438 * 14 12 2 29 29 H 0.97003 * 119.99880 * 0.02562 * 15 14 12 30 30 H 1.07999 * 125.99249 * 0.03868 * 19 18 16 31 31 H 1.09006 * 109.47059 * 270.03523 * 22 21 20 32 32 H 1.08997 * 109.47333 * 30.03207 * 22 21 20 33 33 H 1.09005 * 109.47257 * 150.03926 * 22 21 20 34 34 H 1.07999 * 126.29377 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 7 2.1734 -0.9108 3.5984 16 6 1.8482 -0.4502 4.8225 17 8 1.1493 0.5388 4.9342 18 6 2.3396 -1.1452 6.0263 19 6 3.1498 -2.3024 6.0546 20 7 3.3725 -2.6087 7.3029 21 7 2.7178 -1.6811 8.1209 22 6 2.7175 -1.6819 9.5859 23 6 2.0894 -0.7908 7.3368 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.9111 -0.5221 -4.4375 28 1 1.1494 0.5388 2.5435 29 1 2.7311 -1.6994 3.5094 30 1 3.5219 -2.8378 5.1936 31 1 1.8780 -2.2750 9.9487 32 1 3.6505 -2.1127 9.9492 33 1 2.6236 -0.6587 9.9498 34 1 1.4967 0.0483 7.6700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828088622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:31 Heat of formation + Delta-G solvation = 46.273567 kcal Electronic energy + Delta-G solvation = -19361.527228 eV Core-core repulsion = 16105.175344 eV Total energy + Delta-G solvation = -3256.351883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64305 -39.74186 -38.33546 -34.93436 -33.93876 -33.81060 -31.72903 -30.89703 -29.91988 -27.29696 -25.18005 -23.71656 -22.54121 -21.33243 -20.86889 -19.73139 -17.98125 -17.45249 -16.74175 -16.16905 -16.01382 -15.23838 -15.03869 -14.90866 -14.73930 -14.21757 -14.07794 -13.34760 -13.24028 -13.07745 -12.99254 -12.78329 -12.32265 -11.74088 -11.39353 -11.17410 -10.83039 -10.64196 -10.36276 -10.07927 -9.92888 -9.66767 -9.16001 -9.05203 -8.99223 -8.61409 -7.93611 -6.08543 -4.10191 1.24678 1.90521 1.91241 2.33656 3.19334 3.24257 3.31712 3.36651 3.52354 4.02018 4.35558 4.42499 4.49239 4.66076 4.69843 4.90803 4.93827 5.13810 5.20670 5.40555 5.67832 6.06845 6.09122 6.23373 6.36953 6.44076 6.65305 7.03988 7.06784 7.10170 7.22461 7.49018 7.99388 8.21324 8.48868 8.95791 9.09841 9.49085 11.04006 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.051486 B = 0.003622 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.704883 B = 7728.910220 C = 8178.132951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.059 0.941 4 C -0.509 4.509 5 H 0.095 0.905 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.295 1.295 12 C 0.531 3.469 13 O -0.530 6.530 14 N -0.538 5.538 15 N -0.517 5.517 16 C 0.593 3.407 17 O -0.558 6.558 18 C -0.284 4.284 19 C 0.084 3.916 20 N -0.296 5.296 21 N -0.366 5.366 22 C 0.097 3.903 23 C 0.132 3.868 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.266 0.734 28 H 0.427 0.573 29 H 0.428 0.572 30 H 0.194 0.806 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 1.287 24.514 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 H 0.077 0.923 4 C -0.547 4.547 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.222 1.222 12 C 0.319 3.681 13 O -0.402 6.402 14 N -0.290 5.290 15 N -0.262 5.262 16 C 0.380 3.620 17 O -0.436 6.436 18 C -0.300 4.300 19 C -0.104 4.104 20 N -0.116 5.116 21 N -0.144 5.144 22 C -0.044 4.044 23 C -0.019 4.019 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.269 0.731 29 H 0.270 0.730 30 H 0.211 0.789 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.681 0.410 25.246 25.259 hybrid contribution -1.028 1.336 -0.732 1.837 sum -1.708 1.746 24.515 24.636 Atomic orbital electron populations 1.22182 0.96896 1.01897 0.99711 1.19302 0.93495 0.97727 0.90867 0.92323 1.20882 1.32514 1.14360 0.86966 0.88672 1.24947 0.95749 0.96580 0.95660 1.69870 1.45135 1.40157 0.97922 0.86929 0.80736 0.83733 0.77298 1.20377 1.19038 1.22217 1.21810 0.79321 0.84869 0.82075 1.90599 1.37560 1.26320 1.85737 1.45624 1.55153 1.31282 0.96926 1.44515 1.52851 1.30479 0.98314 1.17172 0.80188 0.83723 0.80909 1.90775 1.39683 1.26737 1.86434 1.19952 1.13864 1.03413 0.92810 1.24197 0.95815 0.94810 0.95545 1.77223 1.19092 1.13406 1.01854 1.48439 1.37794 1.20873 1.07326 1.22007 1.04807 1.04264 0.73319 1.22924 0.94806 0.94384 0.89835 0.92923 0.92056 0.94465 0.92425 0.73148 0.73033 0.78939 0.90118 0.88770 0.88937 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.57 37.16 0.32 -2.71 16 2 C 0.01 0.21 2.23 -92.92 -0.21 0.01 16 3 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 4 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 5 H 0.10 3.04 7.00 -52.49 -0.37 2.68 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 8 Si 0.88 20.94 24.37 -169.99 -4.14 16.80 16 9 H -0.28 -6.36 6.88 56.52 0.39 -5.97 16 10 H -0.27 -5.84 6.52 56.52 0.37 -5.47 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 C 0.53 11.35 7.27 -10.98 -0.08 11.27 16 13 O -0.53 -12.92 15.30 5.55 0.08 -12.83 16 14 N -0.54 -9.43 6.15 31.22 0.19 -9.23 16 15 N -0.52 -7.92 6.25 30.43 0.19 -7.73 16 16 C 0.59 8.59 7.93 -12.52 -0.10 8.49 16 17 O -0.56 -9.42 16.74 5.27 0.09 -9.34 16 18 C -0.28 -3.31 6.13 -105.07 -0.64 -3.96 16 19 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 20 N -0.30 -3.27 12.50 30.86 0.39 -2.89 16 21 N -0.37 -3.16 3.98 -67.60 -0.27 -3.43 16 22 C 0.10 0.38 11.44 59.84 0.68 1.06 16 23 C 0.13 1.23 11.30 -16.56 -0.19 1.04 16 24 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.61 7.56 -51.93 -0.39 0.22 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.43 6.91 7.42 -182.60 -1.35 5.56 16 29 H 0.43 6.03 6.95 -182.60 -1.27 4.76 16 30 H 0.19 1.62 7.50 -52.49 -0.39 1.23 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -36.25 296.35 -4.66 -40.92 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.62 Total: 6.46 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -0.81 Total: 3.21 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 1.27 Total: -49.68 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.80 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.25 -4.66 -40.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828088622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.190 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds