Wall clock time and date at job start Mon Mar 30 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 C 1.50698 * 109.47243 * 120.00156 * 2 1 3 13 13 O 1.21283 * 120.00060 * 119.99696 * 12 2 1 14 14 N 1.34781 * 120.00015 * 300.00449 * 12 2 1 15 15 N 1.40097 * 120.00068 * 179.97438 * 14 12 2 16 16 C 1.34768 * 120.00317 * 179.97438 * 15 14 12 17 17 O 1.21609 * 119.99912 * 0.02562 * 16 15 14 18 18 C 1.47432 * 120.00337 * 180.02562 * 16 15 14 19 19 C 1.41286 * 126.41164 * 359.68940 * 18 16 15 20 20 N 1.30450 * 108.01961 * 179.88031 * 19 18 16 21 21 N 1.39935 * 108.89914 * 0.38652 * 20 19 18 22 22 C 1.46495 * 125.75418 * 179.72190 * 21 20 19 23 23 C 1.34255 * 108.48994 * 359.74990 * 21 20 19 24 24 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 27 27 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 28 28 H 0.97001 * 119.99470 * 359.97438 * 14 12 2 29 29 H 0.97003 * 119.99880 * 0.02562 * 15 14 12 30 30 H 1.07999 * 125.99249 * 0.03868 * 19 18 16 31 31 H 1.09006 * 109.47059 * 270.03523 * 22 21 20 32 32 H 1.08997 * 109.47333 * 30.03207 * 22 21 20 33 33 H 1.09005 * 109.47257 * 150.03926 * 22 21 20 34 34 H 1.07999 * 126.29377 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 7 2.1734 -0.9108 3.5984 16 6 1.8482 -0.4502 4.8225 17 8 1.1493 0.5388 4.9342 18 6 2.3396 -1.1452 6.0263 19 6 3.1498 -2.3024 6.0546 20 7 3.3725 -2.6087 7.3029 21 7 2.7178 -1.6811 8.1209 22 6 2.7175 -1.6819 9.5859 23 6 2.0894 -0.7908 7.3368 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 1.9111 -0.5221 -4.4375 28 1 1.1494 0.5388 2.5435 29 1 2.7311 -1.6994 3.5094 30 1 3.5219 -2.8378 5.1936 31 1 1.8780 -2.2750 9.9487 32 1 3.6505 -2.1127 9.9492 33 1 2.6236 -0.6587 9.9498 34 1 1.4967 0.0483 7.6700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828088622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:31 Heat of formation + Delta-G solvation = 16.430703 kcal Electronic energy + Delta-G solvation = -19362.821311 eV Core-core repulsion = 16105.175344 eV Total energy + Delta-G solvation = -3257.645967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43033 -41.16688 -39.76034 -36.36023 -35.84074 -34.49443 -33.57561 -32.14063 -30.98762 -27.92528 -27.11145 -25.15780 -23.80936 -22.20660 -22.05740 -20.99648 -19.04604 -19.00710 -18.53837 -17.47154 -16.83924 -16.74606 -16.38263 -16.27967 -15.69688 -15.53653 -15.28072 -14.98170 -14.62953 -14.06984 -13.92867 -13.57886 -13.52137 -13.45902 -12.90821 -12.56952 -12.35180 -12.21612 -12.13367 -11.46074 -11.24781 -11.22953 -10.79935 -10.66024 -10.63079 -9.89663 -9.29648 -8.25586 -6.34279 0.44915 0.84056 1.03793 1.37774 1.43897 1.51049 1.54506 1.67166 2.35234 2.36617 3.08133 3.10452 3.47160 3.74985 3.90995 4.09860 4.15268 4.40418 4.44512 4.53718 4.58039 4.63770 4.72698 4.73545 4.99148 5.29285 5.42707 5.48076 5.64793 5.81479 5.85839 6.28240 6.45417 6.62106 6.81101 6.93371 7.27831 7.46239 8.91522 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.051486 B = 0.003622 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.704883 B = 7728.910220 C = 8178.132951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 H 0.078 0.922 4 C -0.522 4.522 5 H 0.037 0.963 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.955 3.045 9 H -0.260 1.260 10 H -0.229 1.229 11 H -0.300 1.300 12 C 0.533 3.467 13 O -0.571 6.571 14 N -0.523 5.523 15 N -0.519 5.519 16 C 0.600 3.400 17 O -0.581 6.581 18 C -0.313 4.313 19 C 0.082 3.918 20 N -0.322 5.322 21 N -0.359 5.359 22 C 0.085 3.915 23 C 0.149 3.851 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.268 0.732 28 H 0.436 0.564 29 H 0.432 0.568 30 H 0.204 0.796 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 3.430 27.375 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 H 0.095 0.905 4 C -0.560 4.560 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.779 3.221 9 H -0.186 1.186 10 H -0.152 1.152 11 H -0.228 1.228 12 C 0.322 3.678 13 O -0.447 6.447 14 N -0.273 5.273 15 N -0.265 5.265 16 C 0.390 3.610 17 O -0.461 6.461 18 C -0.329 4.329 19 C -0.105 4.105 20 N -0.142 5.142 21 N -0.137 5.137 22 C -0.054 4.054 23 C -0.005 4.005 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.280 0.720 29 H 0.275 0.725 30 H 0.221 0.779 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.348 2.558 28.198 28.411 hybrid contribution -0.434 0.580 -1.435 1.607 sum -2.782 3.139 26.763 27.090 Atomic orbital electron populations 1.22095 0.94248 1.02128 1.01757 1.19223 0.95513 0.97764 0.89280 0.90457 1.21025 1.31929 1.13137 0.89895 0.94493 1.25953 0.97334 1.00530 0.94795 1.70057 1.47394 1.42745 0.98761 0.85778 0.78893 0.79201 0.78180 1.18602 1.15221 1.22826 1.21435 0.79038 0.84303 0.83051 1.90590 1.39538 1.28136 1.86435 1.45143 1.54121 1.31036 0.96959 1.44696 1.53365 1.30760 0.97700 1.17540 0.79288 0.83250 0.80947 1.90754 1.40828 1.27829 1.86696 1.19837 1.15974 1.04505 0.92577 1.24415 0.95461 0.94627 0.96030 1.77188 1.20166 1.14682 1.02175 1.48842 1.36326 1.19692 1.08802 1.22453 1.05711 1.06671 0.70547 1.23347 0.93698 0.94448 0.89051 0.93139 0.92950 0.89917 0.92306 0.71982 0.72535 0.77897 0.88624 0.88373 0.85921 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.57 71.99 0.62 -4.84 16 2 C 0.01 0.24 2.23 -12.28 -0.03 0.21 16 3 H 0.08 3.19 7.20 -2.39 -0.02 3.17 16 4 C -0.52 -30.34 8.96 25.60 0.23 -30.12 16 5 H 0.04 2.52 7.00 -2.91 -0.02 2.50 16 6 C 0.01 0.63 5.45 84.65 0.46 1.09 16 7 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 8 Si 0.95 42.26 24.37 68.60 1.67 43.93 16 9 H -0.26 -10.80 6.88 99.48 0.68 -10.12 16 10 H -0.23 -8.76 6.52 99.48 0.65 -8.12 16 11 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.53 22.72 7.27 87.66 0.64 23.35 16 13 O -0.57 -28.80 15.30 -3.04 -0.05 -28.85 16 14 N -0.52 -17.54 6.15 -173.53 -1.07 -18.61 16 15 N -0.52 -15.42 6.25 -175.89 -1.10 -16.52 16 16 C 0.60 16.47 7.93 86.67 0.69 17.15 16 17 O -0.58 -18.39 16.74 -4.06 -0.07 -18.46 16 18 C -0.31 -6.78 6.13 -20.15 -0.12 -6.91 16 19 C 0.08 1.68 11.50 85.65 0.99 2.67 16 20 N -0.32 -6.66 12.50 -56.28 -0.70 -7.36 16 21 N -0.36 -5.28 3.98 -367.79 -1.46 -6.74 16 22 C 0.08 0.38 11.44 127.77 1.46 1.85 16 23 C 0.15 2.35 11.30 84.28 0.95 3.30 16 24 H 0.05 1.93 3.28 -2.39 -0.01 1.92 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 27 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 28 H 0.44 12.96 7.42 -213.32 -1.58 11.38 16 29 H 0.43 12.15 6.95 -213.32 -1.48 10.66 16 30 H 0.20 3.38 7.50 -2.91 -0.02 3.36 16 31 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.22 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -82.26 296.35 1.42 -80.84 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -1.98 Total: 23.72 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.88 Total: 7.76 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.03 Total: -108.95 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.11 Total: -47.30 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.67 Total: 43.93 kcal Total: -82.26 1.42 -80.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828088622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.270 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds