Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 N 1.40105 * 120.00185 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99586 * 179.97438 * 15 14 12 17 17 O 1.21600 * 120.00389 * 0.02562 * 16 15 14 18 18 C 1.47431 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.41298 * 126.41511 * 359.68511 * 18 16 15 20 20 N 1.30442 * 108.02241 * 179.87924 * 19 18 16 21 21 N 1.39942 * 108.89665 * 0.38914 * 20 19 18 22 22 C 1.46499 * 125.74954 * 179.71799 * 21 20 19 23 23 C 1.34257 * 108.49168 * 359.74814 * 21 20 19 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 0.96997 * 119.99768 * 0.02562 * 15 14 12 30 30 H 1.07997 * 125.98228 * 0.04260 * 19 18 16 31 31 H 1.09001 * 109.47141 * 270.03760 * 22 21 20 32 32 H 1.08998 * 109.47596 * 30.03985 * 22 21 20 33 33 H 1.09000 * 109.46704 * 150.03917 * 22 21 20 34 34 H 1.07999 * 126.29002 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 7 2.1741 -0.9099 -3.5986 16 6 1.8481 -0.4496 -4.8226 17 8 1.1486 0.5389 -4.9341 18 6 2.3395 -1.1445 -6.0264 19 6 3.1606 -2.2940 -6.0549 20 7 3.3750 -2.6060 -7.3032 21 7 2.7186 -1.6795 -8.1211 22 6 2.7193 -1.6794 -9.5861 23 6 2.0886 -0.7903 -7.3369 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 2.7318 -1.6985 -3.5096 30 1 3.5414 -2.8232 -5.1940 31 1 3.5583 -1.0856 -9.9490 32 1 2.8144 -2.7026 -9.9495 33 1 1.7859 -1.2499 -9.9498 34 1 1.4943 0.0477 -7.6700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828088623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = 10.606077 kcal Electronic energy + Delta-G solvation = -19302.427789 eV Core-core repulsion = 16044.529248 eV Total energy + Delta-G solvation = -3257.898542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42847 -41.10170 -39.71325 -36.33303 -35.79351 -34.48823 -33.13466 -31.86884 -30.85552 -27.89781 -27.19429 -24.94184 -23.78875 -22.19015 -22.04815 -21.03002 -19.07311 -18.86076 -18.09751 -17.51145 -16.78092 -16.72506 -16.29913 -16.17720 -15.69961 -15.45503 -15.26650 -14.88008 -14.47332 -13.92950 -13.60015 -13.50837 -13.45880 -12.97612 -12.73818 -12.59766 -12.39173 -12.22779 -12.15157 -12.01642 -11.24515 -11.05257 -10.71919 -10.62938 -10.42672 -9.89485 -9.26962 -8.14241 -6.25229 0.44723 0.87528 1.03957 1.44766 1.45683 1.51094 1.57810 1.73499 2.35844 2.45709 3.14955 3.16216 3.51050 3.75259 3.95543 4.12601 4.26661 4.44645 4.54063 4.64948 4.72754 4.73535 4.92409 4.98450 5.29244 5.46075 5.66253 5.75320 5.77193 5.83975 6.00596 6.20314 6.45152 6.65307 6.83823 6.95623 7.40200 7.50845 8.91931 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.050848 B = 0.003465 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.525745 B = 8079.382009 C = 8540.733591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.038 3.962 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.527 3.473 13 O -0.574 6.574 14 N -0.526 5.526 15 N -0.518 5.518 16 C 0.598 3.402 17 O -0.584 6.584 18 C -0.312 4.312 19 C 0.083 3.917 20 N -0.321 5.321 21 N -0.359 5.359 22 C 0.085 3.915 23 C 0.148 3.852 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.266 0.734 28 H 0.433 0.567 29 H 0.432 0.568 30 H 0.206 0.794 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -2.428 -23.287 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.015 3.985 3 H 0.067 0.933 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.451 6.451 14 N -0.275 5.275 15 N -0.264 5.264 16 C 0.387 3.613 17 O -0.464 6.464 18 C -0.329 4.329 19 C -0.104 4.104 20 N -0.141 5.141 21 N -0.136 5.136 22 C -0.054 4.054 23 C -0.006 4.006 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.276 0.724 29 H 0.275 0.725 30 H 0.222 0.778 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.658 -3.170 -24.143 24.406 hybrid contribution -0.071 0.197 1.615 1.628 sum 1.587 -2.973 -22.528 22.778 Atomic orbital electron populations 1.21640 0.94864 0.99896 1.01929 1.18788 0.95421 0.96268 0.88019 0.93267 1.21256 1.31949 1.12968 0.90555 0.92614 1.25608 0.95124 0.95692 1.01488 1.69954 1.37067 1.23494 1.24472 0.85535 0.78696 0.78414 0.78877 1.20002 1.20106 1.20213 1.21996 0.78729 0.84385 0.83210 1.90523 1.39796 1.28158 1.86585 1.45306 1.54106 1.31011 0.97124 1.44690 1.53230 1.30759 0.97749 1.17600 0.79341 0.83270 0.81062 1.90755 1.40916 1.28005 1.86730 1.19835 1.15703 1.04827 0.92489 1.24415 0.95366 0.94591 0.96066 1.77177 1.20160 1.14607 1.02125 1.48841 1.36345 1.19663 1.08799 1.22454 1.06230 1.06170 0.70517 1.23331 0.93848 0.94353 0.89081 0.90558 0.93331 0.95270 0.92500 0.72375 0.72512 0.77768 0.88611 0.88289 0.85980 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.87 71.98 0.64 -5.06 16 2 C 0.04 1.87 2.64 -12.29 -0.03 1.84 16 3 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.53 -29.85 8.37 25.60 0.21 -29.63 16 5 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -50.49 11.32 21.45 0.24 -50.24 16 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.53 23.85 7.26 87.66 0.64 24.49 16 13 O -0.57 -28.81 15.30 -3.03 -0.05 -28.85 16 14 N -0.53 -19.55 6.15 -173.54 -1.07 -20.62 16 15 N -0.52 -16.52 6.25 -175.89 -1.10 -17.62 16 16 C 0.60 17.72 7.93 86.67 0.69 18.41 16 17 O -0.58 -20.19 16.74 -4.03 -0.07 -20.26 16 18 C -0.31 -7.20 6.13 -20.15 -0.12 -7.32 16 19 C 0.08 1.76 11.50 85.65 0.99 2.75 16 20 N -0.32 -6.79 12.50 -56.27 -0.70 -7.49 16 21 N -0.36 -5.55 3.98 -367.79 -1.46 -7.01 16 22 C 0.09 0.44 11.44 127.77 1.46 1.90 16 23 C 0.15 2.52 11.30 84.28 0.95 3.48 16 24 H 0.08 3.81 6.07 -2.39 -0.01 3.80 16 25 H 0.05 1.84 7.57 -2.38 -0.02 1.82 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.43 15.19 7.42 -213.31 -1.58 13.61 16 29 H 0.43 12.70 6.95 -213.32 -1.48 11.22 16 30 H 0.21 3.47 7.50 -2.91 -0.02 3.45 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.22 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -73.35 303.18 1.78 -71.57 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -1.91 Total: 21.96 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.87 Total: 12.41 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.09 Total: -102.99 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.11 Total: -49.12 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.35 1.78 -71.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828088623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.176 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds