Wall clock time and date at job start Mon Mar 30 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35137 * 125.61535 * 2 1 4 4 C 1.40358 * 107.11652 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70977 * 359.97438 * 4 3 2 6 6 C 1.46658 * 125.98896 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99987 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.40102 * 119.99925 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99844 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99867 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47026 * 59.99819 * 12 10 9 14 14 C 1.52999 * 109.46913 * 300.00065 * 12 10 9 15 15 C 1.50699 * 109.47046 * 180.02562 * 12 10 9 16 16 H 1.07996 * 120.00041 * 5.37261 * 15 12 10 17 17 C 1.37879 * 120.00040 * 185.38301 * 15 12 10 18 18 N 1.31505 * 120.00055 * 184.88901 * 17 15 12 19 19 Si 1.86801 * 119.99829 * 5.15649 * 17 15 12 20 20 H 1.48507 * 109.46998 * 269.72922 * 19 17 15 21 21 H 1.48499 * 109.47175 * 29.72656 * 19 17 15 22 22 H 1.48497 * 109.47047 * 149.72923 * 19 17 15 23 23 O 1.33931 * 125.62263 * 180.26540 * 2 1 3 24 24 H 1.08999 * 109.47277 * 90.00339 * 1 2 3 25 25 H 1.09000 * 109.47110 * 210.00062 * 1 2 3 26 26 H 1.08997 * 109.47619 * 330.00045 * 1 2 3 27 27 H 1.08002 * 126.43884 * 359.97058 * 3 2 1 28 28 H 1.08002 * 126.64381 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99978 * 359.97438 * 8 6 5 30 30 H 0.97000 * 120.00077 * 0.02562 * 9 8 6 31 31 H 1.09003 * 109.47063 * 174.99029 * 14 12 10 32 32 H 1.08997 * 109.47139 * 294.98779 * 14 12 10 33 33 H 1.09000 * 109.47363 * 54.98948 * 14 12 10 34 34 H 0.97006 * 120.00256 * 355.26301 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 0.0006 5 6 3.5824 -0.7115 0.0015 6 6 4.7415 -1.6100 0.0019 7 8 5.8681 -1.1497 0.0008 8 7 4.5591 -2.9453 0.0033 9 7 5.6665 -3.8035 0.0031 10 6 5.4840 -5.1389 0.0040 11 8 4.3613 -5.5976 0.0055 12 6 6.6752 -6.0622 0.0044 13 1 7.2773 -5.8780 0.8941 14 6 7.5198 -5.8053 -1.2452 15 6 6.2018 -7.4929 0.0048 16 1 5.1482 -7.7131 -0.0827 17 6 7.1139 -8.5208 0.1172 18 7 6.7125 -9.7694 0.0212 19 14 8.9185 -8.1399 0.4134 20 1 9.6160 -8.0032 -0.8905 21 1 9.0381 -6.8702 1.1742 22 1 9.5360 -9.2435 1.1918 23 8 2.2870 -1.0887 -0.0050 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9611 2.1261 -0.0004 28 1 4.5112 1.2705 0.0004 29 1 3.6611 -3.3121 0.0045 30 1 6.5644 -3.4367 0.0023 31 1 8.4264 -6.4088 -1.2013 32 1 6.9469 -6.0744 -2.1326 33 1 7.7878 -4.7498 -1.2920 34 1 5.7669 -9.9701 -0.0598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829831951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:11 Heat of formation + Delta-G solvation = -29.917346 kcal Electronic energy + Delta-G solvation = -19456.798275 eV Core-core repulsion = 16164.849755 eV Total energy + Delta-G solvation = -3291.948520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.98634 -40.01036 -38.56498 -35.18298 -33.97951 -33.59722 -32.42918 -31.69498 -30.35432 -27.34306 -24.92959 -23.45255 -22.23906 -21.91929 -20.88621 -19.96172 -18.20699 -17.70254 -17.29706 -16.77740 -16.13695 -15.46184 -15.14844 -14.77283 -14.28580 -13.90897 -13.60215 -13.48637 -13.36075 -13.31806 -13.25653 -12.86137 -12.28829 -11.98363 -11.73600 -11.39393 -10.95818 -10.66314 -10.61432 -10.31662 -10.29707 -9.83992 -9.11489 -8.86140 -8.72600 -8.49864 -8.10170 -6.49596 -4.13623 0.77655 1.93702 2.02925 2.44566 2.90061 3.30208 3.37219 3.37997 3.52853 4.06391 4.38985 4.43003 4.61202 4.72295 4.96262 5.03531 5.23836 5.25108 5.34260 5.51952 5.59768 5.67099 6.07372 6.09358 6.22152 6.35874 6.50069 6.66483 6.82011 6.96594 7.10083 7.59634 7.93454 7.99687 8.41224 8.84738 8.93639 9.57733 10.92762 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040366 B = 0.003852 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.483423 B = 7266.722954 C = 7837.798836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.225 4.225 4 C -0.110 4.110 5 C -0.072 4.072 6 C 0.599 3.401 7 O -0.528 6.528 8 N -0.509 5.509 9 N -0.538 5.538 10 C 0.530 3.470 11 O -0.531 6.531 12 C 0.010 3.990 13 H 0.060 0.940 14 C -0.148 4.148 15 C -0.585 4.585 16 H 0.077 0.923 17 C 0.029 3.971 18 N -0.908 5.908 19 Si 1.053 2.947 20 H -0.281 1.281 21 H -0.278 1.278 22 H -0.288 1.288 23 O -0.162 6.162 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.434 0.566 30 H 0.428 0.572 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 21.898 -0.174 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.244 4.244 4 C -0.131 4.131 5 C -0.125 4.125 6 C 0.384 3.616 7 O -0.405 6.405 8 N -0.253 5.253 9 N -0.291 5.291 10 C 0.319 3.681 11 O -0.403 6.403 12 C -0.013 4.013 13 H 0.078 0.922 14 C -0.206 4.206 15 C -0.623 4.623 16 H 0.095 0.905 17 C -0.176 4.176 18 N -0.542 5.542 19 Si 0.883 3.117 20 H -0.208 1.208 21 H -0.205 1.205 22 H -0.214 1.214 23 O -0.058 6.058 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.175 0.825 28 H 0.180 0.820 29 H 0.276 0.724 30 H 0.270 0.730 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.784 20.784 -0.022 21.863 hybrid contribution -1.523 0.947 -0.192 1.804 sum -8.307 21.731 -0.214 23.266 Atomic orbital electron populations 1.20445 0.84434 1.04656 1.04122 1.22876 0.94384 0.84005 1.01690 1.21594 0.92209 0.99850 1.10759 1.21915 0.98770 0.92512 0.99903 1.21642 0.81465 0.94222 1.15206 1.16447 0.86813 0.79946 0.78348 1.90890 1.21696 1.75628 1.52331 1.44686 1.05147 1.02042 1.73403 1.45829 1.01825 1.02251 1.79167 1.22113 0.93641 0.78772 0.73566 1.90592 1.25945 1.75169 1.48617 1.19404 0.90274 0.95259 0.96399 0.92227 1.22156 1.00199 0.98541 0.99659 1.22008 0.97028 0.87716 1.55597 0.90492 1.25786 1.05640 0.92860 0.93318 1.70783 1.18587 1.18889 1.45925 0.83881 0.75208 0.75546 0.77088 1.20839 1.20451 1.21417 1.84041 1.15903 1.35081 1.70771 0.89424 0.89937 0.88847 0.82478 0.81977 0.72406 0.72953 0.92472 0.92271 0.94759 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 36.00 0.37 -0.04 16 2 C 0.02 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -1.99 10.77 -39.89 -0.43 -2.42 16 4 C -0.11 -1.22 10.62 -39.40 -0.42 -1.63 16 5 C -0.07 -0.95 7.13 -36.80 -0.26 -1.21 16 6 C 0.60 9.25 7.90 -12.86 -0.10 9.15 16 7 O -0.53 -9.12 16.70 5.19 0.09 -9.04 16 8 N -0.51 -8.34 6.26 30.26 0.19 -8.15 16 9 N -0.54 -9.70 6.12 31.22 0.19 -9.51 16 10 C 0.53 11.64 7.27 -10.98 -0.08 11.56 16 11 O -0.53 -13.39 15.31 5.56 0.09 -13.30 16 12 C 0.01 0.23 2.22 -92.92 -0.21 0.03 16 13 H 0.06 1.32 6.64 -51.93 -0.34 0.97 16 14 C -0.15 -2.98 8.72 37.16 0.32 -2.65 16 15 C -0.59 -16.54 8.72 -34.44 -0.30 -16.84 16 16 H 0.08 2.45 7.00 -52.49 -0.37 2.09 16 17 C 0.03 0.82 5.43 -17.82 -0.10 0.72 16 18 N -0.91 -27.87 13.70 55.43 0.76 -27.11 16 19 Si 1.05 24.38 25.28 -169.99 -4.30 20.08 16 20 H -0.28 -6.13 6.82 56.52 0.39 -5.74 16 21 H -0.28 -5.81 6.35 56.52 0.36 -5.45 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 O -0.16 -1.96 10.40 5.00 0.05 -1.91 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.43 6.92 7.76 -182.60 -1.42 5.51 16 30 H 0.43 6.98 7.36 -182.60 -1.34 5.64 16 31 H 0.06 1.15 4.41 -51.93 -0.23 0.92 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.56 7.43 -51.93 -0.39 0.17 16 34 H 0.27 8.35 8.72 -40.82 -0.36 8.00 16 LS Contribution 298.54 15.07 4.50 4.50 Total: -1.00 -34.08 298.54 -5.72 -39.81 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.83 Total: 8.04 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.45 Total: -3.39 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 1.14 Total: -44.77 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.22 Total: -24.25 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.30 Total: 20.08 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.08 -5.72 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829831951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.888 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds