Wall clock time and date at job start Mon Mar 30 2020 04:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35137 * 125.61535 * 2 1 4 4 C 1.40358 * 107.11652 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70977 * 359.97438 * 4 3 2 6 6 C 1.46658 * 125.98896 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99987 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.40102 * 119.99925 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99844 * 180.02562 * 9 8 6 11 11 O 1.21281 * 120.00239 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99867 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47026 * 59.99819 * 12 10 9 14 14 C 1.52999 * 109.46913 * 300.00065 * 12 10 9 15 15 C 1.50699 * 109.47046 * 180.02562 * 12 10 9 16 16 H 1.07996 * 120.00041 * 5.37261 * 15 12 10 17 17 C 1.37879 * 120.00040 * 185.38301 * 15 12 10 18 18 N 1.31505 * 120.00055 * 184.88901 * 17 15 12 19 19 Si 1.86801 * 119.99829 * 5.15649 * 17 15 12 20 20 H 1.48507 * 109.46998 * 269.72922 * 19 17 15 21 21 H 1.48499 * 109.47175 * 29.72656 * 19 17 15 22 22 H 1.48497 * 109.47047 * 149.72923 * 19 17 15 23 23 O 1.33931 * 125.62263 * 180.26540 * 2 1 3 24 24 H 1.08999 * 109.47277 * 90.00339 * 1 2 3 25 25 H 1.09000 * 109.47110 * 210.00062 * 1 2 3 26 26 H 1.08997 * 109.47619 * 330.00045 * 1 2 3 27 27 H 1.08002 * 126.43884 * 359.97058 * 3 2 1 28 28 H 1.08002 * 126.64381 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99978 * 359.97438 * 8 6 5 30 30 H 0.97000 * 120.00077 * 0.02562 * 9 8 6 31 31 H 1.09003 * 109.47063 * 174.99029 * 14 12 10 32 32 H 1.08997 * 109.47139 * 294.98779 * 14 12 10 33 33 H 1.09000 * 109.47363 * 54.98948 * 14 12 10 34 34 H 0.97006 * 120.00256 * 355.26301 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 0.0006 5 6 3.5824 -0.7115 0.0015 6 6 4.7415 -1.6100 0.0019 7 8 5.8681 -1.1497 0.0008 8 7 4.5591 -2.9453 0.0033 9 7 5.6665 -3.8035 0.0031 10 6 5.4840 -5.1389 0.0040 11 8 4.3613 -5.5976 0.0055 12 6 6.6752 -6.0622 0.0044 13 1 7.2773 -5.8780 0.8941 14 6 7.5198 -5.8053 -1.2452 15 6 6.2018 -7.4929 0.0048 16 1 5.1482 -7.7131 -0.0827 17 6 7.1139 -8.5208 0.1172 18 7 6.7125 -9.7694 0.0212 19 14 8.9185 -8.1399 0.4134 20 1 9.6160 -8.0032 -0.8905 21 1 9.0381 -6.8702 1.1742 22 1 9.5360 -9.2435 1.1918 23 8 2.2870 -1.0887 -0.0050 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9611 2.1261 -0.0004 28 1 4.5112 1.2705 0.0004 29 1 3.6611 -3.3121 0.0045 30 1 6.5644 -3.4367 0.0023 31 1 8.4264 -6.4088 -1.2013 32 1 6.9469 -6.0744 -2.1326 33 1 7.7878 -4.7498 -1.2920 34 1 5.7669 -9.9701 -0.0598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829831951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:10 Heat of formation + Delta-G solvation = -56.619336 kcal Electronic energy + Delta-G solvation = -19457.956160 eV Core-core repulsion = 16164.849755 eV Total energy + Delta-G solvation = -3293.106405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.81575 -41.47281 -40.09974 -36.65556 -35.94325 -34.39778 -33.72464 -33.08709 -31.81138 -28.17871 -26.84514 -24.96019 -23.54659 -22.78755 -22.16588 -21.21313 -19.71779 -19.35881 -18.96146 -17.70508 -17.64799 -16.71165 -16.45268 -16.06655 -15.68753 -15.54188 -15.14568 -14.65898 -14.29848 -14.08058 -14.02128 -13.97612 -13.76799 -13.54440 -13.15180 -12.82625 -12.57434 -12.42352 -12.05333 -11.89351 -11.56302 -11.11414 -10.93865 -10.85307 -10.61386 -9.81244 -9.42195 -8.78797 -6.43411 -0.16893 0.60005 1.22840 1.46739 1.53993 1.59418 1.60004 1.74510 1.94186 2.52405 2.89092 3.09547 3.42892 3.79174 3.87406 3.98688 4.37620 4.48011 4.52608 4.57079 4.67982 4.70256 4.71696 4.87466 4.99598 5.10132 5.35593 5.37569 5.42490 5.46995 5.70658 5.93614 6.03356 6.41560 6.55459 6.59994 7.21960 7.39963 8.62939 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040366 B = 0.003852 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.483423 B = 7266.722954 C = 7837.798836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.028 3.972 3 C -0.226 4.226 4 C -0.098 4.098 5 C -0.113 4.113 6 C 0.605 3.395 7 O -0.548 6.548 8 N -0.514 5.514 9 N -0.521 5.521 10 C 0.531 3.469 11 O -0.575 6.575 12 C 0.005 3.995 13 H 0.082 0.918 14 C -0.143 4.143 15 C -0.593 4.593 16 H 0.021 0.979 17 C -0.025 4.025 18 N -0.942 5.942 19 Si 1.093 2.907 20 H -0.254 1.254 21 H -0.235 1.235 22 H -0.295 1.295 23 O -0.180 6.180 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.192 0.808 28 H 0.173 0.827 29 H 0.434 0.566 30 H 0.440 0.560 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 25.540 -0.122 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.244 4.244 4 C -0.118 4.118 5 C -0.165 4.165 6 C 0.394 3.606 7 O -0.428 6.428 8 N -0.259 5.259 9 N -0.272 5.272 10 C 0.321 3.679 11 O -0.451 6.451 12 C -0.019 4.019 13 H 0.100 0.900 14 C -0.201 4.201 15 C -0.631 4.631 16 H 0.039 0.961 17 C -0.221 4.221 18 N -0.578 5.578 19 Si 0.913 3.087 20 H -0.179 1.179 21 H -0.159 1.159 22 H -0.222 1.222 23 O -0.077 6.077 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.139 0.861 27 H 0.209 0.791 28 H 0.190 0.810 29 H 0.276 0.724 30 H 0.284 0.716 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.963 24.500 0.019 25.216 hybrid contribution -2.006 -0.035 -0.209 2.018 sum -7.969 24.466 -0.190 25.731 Atomic orbital electron populations 1.20708 0.81565 1.06029 1.05454 1.23811 0.95974 0.83457 0.99194 1.21998 0.90878 1.01380 1.10162 1.22263 1.00357 0.91698 0.97526 1.21285 0.81457 0.94343 1.19417 1.16743 0.87472 0.79384 0.77011 1.90861 1.22768 1.75854 1.53295 1.44828 1.04444 1.02174 1.74452 1.45309 1.03016 1.01542 1.77379 1.21806 0.92652 0.79988 0.73486 1.90581 1.27351 1.76243 1.50967 1.19353 0.91257 0.92383 0.98883 0.90016 1.22056 0.99361 1.01614 0.97020 1.22093 0.94557 0.91440 1.55012 0.96050 1.27502 1.10658 0.91894 0.92052 1.70940 1.17129 1.20682 1.49057 0.83486 0.69314 0.77085 0.78809 1.17928 1.15861 1.22197 1.84032 1.15754 1.36549 1.71373 0.87931 0.89971 0.86052 0.79082 0.80967 0.72376 0.71598 0.91834 0.93727 0.90260 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.41 71.23 0.74 0.15 16 2 C 0.03 0.45 7.31 24.97 0.18 0.63 16 3 C -0.23 -3.26 10.77 22.07 0.24 -3.02 16 4 C -0.10 -1.95 10.62 22.39 0.24 -1.71 16 5 C -0.11 -2.85 7.13 24.07 0.17 -2.68 16 6 C 0.61 18.31 7.90 86.44 0.68 18.99 16 7 O -0.55 -18.31 16.70 -4.34 -0.07 -18.38 16 8 N -0.51 -16.75 6.26 -176.41 -1.10 -17.85 16 9 N -0.52 -18.28 6.12 -173.53 -1.06 -19.35 16 10 C 0.53 23.42 7.27 87.66 0.64 24.05 16 11 O -0.58 -30.17 15.31 -3.03 -0.05 -30.22 16 12 C 0.00 0.20 2.22 -12.29 -0.03 0.18 16 13 H 0.08 3.36 6.64 -2.39 -0.02 3.35 16 14 C -0.14 -5.38 8.72 71.98 0.63 -4.76 16 15 C -0.59 -34.57 8.72 25.60 0.22 -34.34 16 16 H 0.02 1.45 7.00 -2.91 -0.02 1.43 16 17 C -0.02 -1.43 5.43 84.66 0.46 -0.97 16 18 N -0.94 -60.20 13.70 21.45 0.29 -59.91 16 19 Si 1.09 47.31 25.28 68.60 1.73 49.05 16 20 H -0.25 -9.90 6.82 99.48 0.68 -9.22 16 21 H -0.24 -8.50 6.35 99.48 0.63 -7.87 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 23 O -0.18 -4.20 10.40 -5.02 -0.05 -4.25 16 24 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 28 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.43 14.16 7.76 -213.32 -1.65 12.50 16 30 H 0.44 13.34 7.36 -213.32 -1.57 11.77 16 31 H 0.06 2.32 4.41 -2.39 -0.01 2.31 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.27 7.43 -2.39 -0.02 2.25 16 34 H 0.25 16.44 8.72 -92.70 -0.81 15.64 16 Total: -1.00 -78.89 298.54 1.66 -77.23 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -2.20 Total: 27.17 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.18 Total: -3.48 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -1.87 Total: -97.11 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.17 Total: -52.85 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.73 Total: 49.05 kcal Total: -78.89 1.66 -77.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829831951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.612 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds