Wall clock time and date at job start Mon Mar 30 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35138 * 125.61058 * 2 1 4 4 C 1.40362 * 107.11088 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.71146 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98878 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00139 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99527 * 179.97438 * 6 5 4 9 9 N 1.40103 * 119.99309 * 180.02562 * 8 6 5 10 10 C 1.34785 * 119.99637 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99716 * 0.02562 * 10 9 8 12 12 C 1.50695 * 119.99699 * 179.97438 * 10 9 8 13 13 H 1.09000 * 109.47719 * 300.00122 * 12 10 9 14 14 C 1.53000 * 109.47409 * 60.00300 * 12 10 9 15 15 C 1.50707 * 109.46810 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00096 * 324.94158 * 15 12 10 17 17 C 1.37880 * 119.99700 * 144.94895 * 15 12 10 18 18 N 1.31520 * 119.99654 * 175.17311 * 17 15 12 19 19 Si 1.86797 * 120.00257 * 355.16743 * 17 15 12 20 20 H 1.48503 * 109.47240 * 274.88403 * 19 17 15 21 21 H 1.48500 * 109.46883 * 34.88602 * 19 17 15 22 22 H 1.48497 * 109.46908 * 154.88318 * 19 17 15 23 23 O 1.33921 * 125.62187 * 180.31598 * 2 1 3 24 24 H 1.09002 * 109.47192 * 89.99816 * 1 2 3 25 25 H 1.09007 * 109.46867 * 209.99439 * 1 2 3 26 26 H 1.08995 * 109.47474 * 329.99288 * 1 2 3 27 27 H 1.07991 * 126.44531 * 0.06098 * 3 2 1 28 28 H 1.07997 * 126.64360 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00787 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00454 * 0.02562 * 9 8 6 31 31 H 1.08995 * 109.47091 * 294.87892 * 14 12 10 32 32 H 1.09005 * 109.46601 * 54.87146 * 14 12 10 33 33 H 1.08995 * 109.47670 * 174.87158 * 14 12 10 34 34 H 0.96998 * 119.99707 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0987 0.0000 4 6 3.6249 0.6533 -0.0006 5 6 3.5823 -0.7115 -0.0015 6 6 4.7415 -1.6099 -0.0029 7 8 5.8681 -1.1497 -0.0038 8 7 4.5590 -2.9453 -0.0032 9 7 5.6664 -3.8035 -0.0040 10 6 5.4840 -5.1389 -0.0038 11 8 4.3613 -5.5975 -0.0033 12 6 6.6751 -6.0620 -0.0052 13 1 7.2761 -5.8785 -0.8959 14 6 7.5216 -5.8044 1.2430 15 6 6.2017 -7.4928 -0.0053 16 1 5.3058 -7.7652 0.5327 17 6 6.9126 -8.4541 -0.6921 18 7 6.5545 -9.7172 -0.6148 19 14 8.3842 -7.9624 -1.7322 20 1 7.9209 -7.5484 -3.0810 21 1 9.0930 -6.8303 -1.0832 22 1 9.3086 -9.1176 -1.8594 23 8 2.2870 -1.0886 -0.0060 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9611 2.1260 0.0009 28 1 4.5111 1.2705 -0.0011 29 1 3.6612 -3.3122 -0.0029 30 1 6.5644 -3.4367 -0.0040 31 1 7.9387 -4.7985 1.1979 32 1 6.8970 -5.8992 2.1313 33 1 8.3318 -6.5321 1.2892 34 1 7.0548 -10.3935 -1.0977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829831952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:14 Heat of formation + Delta-G solvation = -29.440678 kcal Electronic energy + Delta-G solvation = -19442.621382 eV Core-core repulsion = 16150.693532 eV Total energy + Delta-G solvation = -3291.927850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.95683 -39.95040 -38.49797 -35.11546 -33.82267 -33.56499 -32.39516 -31.71836 -30.38837 -27.31163 -25.34227 -23.44499 -22.23489 -21.88778 -20.84215 -19.94264 -18.16236 -17.63788 -16.99165 -16.74376 -15.95794 -15.31387 -15.09367 -14.78384 -14.29757 -14.08698 -13.57455 -13.45898 -13.36157 -13.25342 -13.22559 -12.58795 -12.37131 -12.25999 -11.58543 -11.23871 -10.97982 -10.84498 -10.61724 -10.36866 -10.28879 -9.89074 -9.27288 -9.03890 -8.83003 -8.64706 -8.03990 -6.15048 -4.15880 0.80961 1.98426 2.05740 2.47934 2.94170 3.21646 3.28267 3.31022 3.43860 4.10058 4.31908 4.42165 4.63925 4.75767 4.98804 5.06043 5.15403 5.26595 5.37263 5.55303 5.65773 5.71207 6.04912 6.10106 6.30910 6.40182 6.53343 6.71272 6.87670 6.99329 7.11244 7.43325 7.89812 7.99278 8.42066 8.91155 8.99747 9.42805 10.97506 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035998 B = 0.003927 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.635532 B = 7128.029535 C = 7564.715307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.225 4.225 4 C -0.111 4.111 5 C -0.072 4.072 6 C 0.598 3.402 7 O -0.529 6.529 8 N -0.509 5.509 9 N -0.540 5.540 10 C 0.521 3.479 11 O -0.525 6.525 12 C 0.010 3.990 13 H 0.061 0.939 14 C -0.138 4.138 15 C -0.499 4.499 16 H 0.088 0.912 17 C 0.075 3.925 18 N -0.889 5.889 19 Si 0.870 3.130 20 H -0.274 1.274 21 H -0.262 1.262 22 H -0.284 1.284 23 O -0.161 6.161 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.434 0.566 30 H 0.427 0.573 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 21.137 0.963 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.244 4.244 4 C -0.132 4.132 5 C -0.125 4.125 6 C 0.384 3.616 7 O -0.407 6.407 8 N -0.253 5.253 9 N -0.292 5.292 10 C 0.310 3.690 11 O -0.397 6.397 12 C -0.013 4.013 13 H 0.079 0.921 14 C -0.196 4.196 15 C -0.537 4.537 16 H 0.106 0.894 17 C -0.128 4.128 18 N -0.526 5.526 19 Si 0.697 3.303 20 H -0.199 1.199 21 H -0.187 1.187 22 H -0.210 1.210 23 O -0.057 6.057 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.175 0.825 28 H 0.180 0.820 29 H 0.276 0.724 30 H 0.269 0.731 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.751 20.526 0.899 21.959 hybrid contribution 0.794 0.379 -0.657 1.099 sum -6.957 20.905 0.241 22.033 Atomic orbital electron populations 1.20445 0.84449 1.04643 1.04114 1.22869 0.94381 0.84015 1.01723 1.21589 0.92222 0.99832 1.10796 1.21909 0.98747 0.92539 1.00014 1.21667 0.81483 0.94235 1.15086 1.16454 0.86777 0.80009 0.78404 1.90885 1.21711 1.75652 1.52443 1.44730 1.05264 1.02036 1.73234 1.45988 1.01739 1.02233 1.79274 1.22585 0.93983 0.78660 0.73819 1.90611 1.25750 1.75124 1.48174 1.19360 0.90224 0.94938 0.96790 0.92094 1.22020 0.99936 0.98902 0.98736 1.20694 1.12536 0.87583 1.32875 0.89382 1.25017 0.97078 0.94847 0.95893 1.69874 1.40408 1.00319 1.42013 0.86968 0.83184 0.78652 0.81516 1.19941 1.18653 1.21034 1.84041 1.15902 1.35057 1.70741 0.89434 0.89922 0.88878 0.82517 0.82018 0.72404 0.73120 0.95101 0.92934 0.91845 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.41 36.00 0.37 -0.05 16 2 C 0.02 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -2.02 10.77 -39.89 -0.43 -2.45 16 4 C -0.11 -1.24 10.62 -39.39 -0.42 -1.66 16 5 C -0.07 -0.95 7.13 -36.80 -0.26 -1.21 16 6 C 0.60 9.30 7.90 -12.86 -0.10 9.20 16 7 O -0.53 -9.22 16.70 5.20 0.09 -9.13 16 8 N -0.51 -8.37 6.26 30.26 0.19 -8.18 16 9 N -0.54 -9.73 6.16 31.22 0.19 -9.54 16 10 C 0.52 11.36 7.27 -10.98 -0.08 11.28 16 11 O -0.52 -13.17 15.61 5.56 0.09 -13.09 16 12 C 0.01 0.23 2.30 -92.92 -0.21 0.02 16 13 H 0.06 1.33 5.29 -51.93 -0.27 1.06 16 14 C -0.14 -2.69 9.03 37.16 0.34 -2.35 16 15 C -0.50 -13.92 8.36 -34.44 -0.29 -14.21 16 16 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 19 Si 0.87 20.40 27.00 -169.99 -4.59 15.81 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.26 -5.64 6.81 56.52 0.38 -5.26 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 O -0.16 -1.98 10.40 5.02 0.05 -1.92 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.43 6.94 7.76 -182.60 -1.42 5.52 16 30 H 0.43 6.98 7.51 -182.60 -1.37 5.61 16 31 H 0.03 0.49 7.71 -51.93 -0.40 0.09 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -33.64 304.69 -6.03 -39.67 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.97 Total: 7.26 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.44 Total: 0.51 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 1.16 Total: -43.71 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.23 Total: -24.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.59 Total: 15.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.64 -6.03 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829831952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.226 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds