Wall clock time and date at job start Mon Mar 30 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35138 * 125.61058 * 2 1 4 4 C 1.40362 * 107.11088 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.71146 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98878 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00139 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99527 * 179.97438 * 6 5 4 9 9 N 1.40103 * 119.99309 * 180.02562 * 8 6 5 10 10 C 1.34785 * 119.99637 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99716 * 0.02562 * 10 9 8 12 12 C 1.50695 * 119.99699 * 179.97438 * 10 9 8 13 13 H 1.09000 * 109.47719 * 300.00122 * 12 10 9 14 14 C 1.53000 * 109.47409 * 60.00300 * 12 10 9 15 15 C 1.50707 * 109.46810 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00096 * 324.94158 * 15 12 10 17 17 C 1.37880 * 119.99700 * 144.94895 * 15 12 10 18 18 N 1.31520 * 119.99654 * 175.17311 * 17 15 12 19 19 Si 1.86797 * 120.00257 * 355.16743 * 17 15 12 20 20 H 1.48503 * 109.47240 * 274.88403 * 19 17 15 21 21 H 1.48500 * 109.46883 * 34.88602 * 19 17 15 22 22 H 1.48497 * 109.46908 * 154.88318 * 19 17 15 23 23 O 1.33921 * 125.62187 * 180.31598 * 2 1 3 24 24 H 1.09002 * 109.47192 * 89.99816 * 1 2 3 25 25 H 1.09007 * 109.46867 * 209.99439 * 1 2 3 26 26 H 1.08995 * 109.47474 * 329.99288 * 1 2 3 27 27 H 1.07991 * 126.44531 * 0.06098 * 3 2 1 28 28 H 1.07997 * 126.64360 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00787 * 0.02562 * 8 6 5 30 30 H 0.96997 * 120.00454 * 0.02562 * 9 8 6 31 31 H 1.08995 * 109.47091 * 294.87892 * 14 12 10 32 32 H 1.09005 * 109.46601 * 54.87146 * 14 12 10 33 33 H 1.08995 * 109.47670 * 174.87158 * 14 12 10 34 34 H 0.96998 * 119.99707 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0987 0.0000 4 6 3.6249 0.6533 -0.0006 5 6 3.5823 -0.7115 -0.0015 6 6 4.7415 -1.6099 -0.0029 7 8 5.8681 -1.1497 -0.0038 8 7 4.5590 -2.9453 -0.0032 9 7 5.6664 -3.8035 -0.0040 10 6 5.4840 -5.1389 -0.0038 11 8 4.3613 -5.5975 -0.0033 12 6 6.6751 -6.0620 -0.0052 13 1 7.2761 -5.8785 -0.8959 14 6 7.5216 -5.8044 1.2430 15 6 6.2017 -7.4928 -0.0053 16 1 5.3058 -7.7652 0.5327 17 6 6.9126 -8.4541 -0.6921 18 7 6.5545 -9.7172 -0.6148 19 14 8.3842 -7.9624 -1.7322 20 1 7.9209 -7.5484 -3.0810 21 1 9.0930 -6.8303 -1.0832 22 1 9.3086 -9.1176 -1.8594 23 8 2.2870 -1.0886 -0.0060 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9611 2.1260 0.0009 28 1 4.5111 1.2705 -0.0011 29 1 3.6612 -3.3122 -0.0029 30 1 6.5644 -3.4367 -0.0040 31 1 7.9387 -4.7985 1.1979 32 1 6.8970 -5.8992 2.1313 33 1 8.3318 -6.5321 1.2892 34 1 7.0548 -10.3935 -1.0977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829831952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:13 Heat of formation + Delta-G solvation = -55.123636 kcal Electronic energy + Delta-G solvation = -19443.735079 eV Core-core repulsion = 16150.693532 eV Total energy + Delta-G solvation = -3293.041547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.79504 -41.40877 -40.03834 -36.58534 -35.74974 -34.37395 -33.72957 -33.09078 -31.80935 -28.15908 -27.26206 -24.90877 -23.52048 -22.76260 -22.11599 -21.18181 -19.44687 -19.33021 -18.77164 -17.65364 -17.44252 -16.67366 -16.44421 -16.26371 -15.73944 -15.60084 -15.07489 -14.47175 -14.30503 -14.15306 -14.06150 -13.99893 -13.74882 -13.22656 -12.99836 -12.80738 -12.65020 -12.56782 -12.21116 -11.88420 -11.75888 -11.29910 -11.09567 -10.83424 -10.73774 -9.77450 -9.38136 -8.29639 -6.37732 -0.14402 0.64642 1.25323 1.38585 1.40395 1.50082 1.60137 1.61813 1.97588 2.34610 2.89462 3.09296 3.47362 3.81779 3.89402 4.04652 4.33336 4.49910 4.54595 4.66567 4.69730 4.71992 4.76995 4.89301 5.07220 5.11828 5.37797 5.40700 5.44811 5.53396 5.55070 5.92245 6.21422 6.46852 6.64495 6.73841 7.22411 7.32238 8.87519 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035998 B = 0.003927 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.635532 B = 7128.029535 C = 7564.715307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.028 3.972 3 C -0.226 4.226 4 C -0.099 4.099 5 C -0.112 4.112 6 C 0.605 3.395 7 O -0.550 6.550 8 N -0.514 5.514 9 N -0.524 5.524 10 C 0.524 3.476 11 O -0.569 6.569 12 C 0.007 3.993 13 H 0.080 0.920 14 C -0.133 4.133 15 C -0.510 4.510 16 H 0.029 0.971 17 C 0.012 3.988 18 N -0.946 5.946 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.222 1.222 22 H -0.283 1.283 23 O -0.179 6.179 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.191 0.809 28 H 0.172 0.828 29 H 0.434 0.566 30 H 0.438 0.562 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 24.699 0.409 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.245 4.245 4 C -0.120 4.120 5 C -0.164 4.164 6 C 0.393 3.607 7 O -0.430 6.430 8 N -0.259 5.259 9 N -0.275 5.275 10 C 0.313 3.687 11 O -0.444 6.444 12 C -0.016 4.016 13 H 0.098 0.902 14 C -0.191 4.191 15 C -0.548 4.548 16 H 0.047 0.953 17 C -0.185 4.185 18 N -0.585 5.585 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.144 1.144 22 H -0.209 1.209 23 O -0.076 6.076 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.139 0.861 27 H 0.209 0.791 28 H 0.190 0.810 29 H 0.277 0.723 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.084 24.158 0.365 25.178 hybrid contribution 0.380 -0.588 -0.428 0.821 sum -6.704 23.570 -0.062 24.505 Atomic orbital electron populations 1.20707 0.81568 1.06029 1.05443 1.23805 0.95974 0.83461 0.99213 1.21991 0.90888 1.01365 1.10212 1.22254 1.00332 0.91732 0.97654 1.21302 0.81479 0.94349 1.19297 1.16742 0.87430 0.79455 0.77067 1.90856 1.22798 1.75889 1.53411 1.44845 1.04561 1.02168 1.74280 1.45438 1.02907 1.01591 1.77564 1.22190 0.92976 0.79846 0.73674 1.90598 1.27156 1.76186 1.50507 1.19316 0.91020 0.92091 0.99171 0.90247 1.21920 0.99212 1.01511 0.96430 1.20796 1.10723 0.90979 1.32329 0.95273 1.26018 1.00894 0.94396 0.97235 1.70052 1.42670 1.01973 1.43769 0.85830 0.78822 0.79614 0.79407 1.19445 1.14403 1.20922 1.84032 1.15742 1.36518 1.71336 0.87951 0.89934 0.86081 0.79128 0.81034 0.72340 0.71781 0.90719 0.93764 0.91791 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.41 71.24 0.74 0.13 16 2 C 0.03 0.45 7.31 24.97 0.18 0.64 16 3 C -0.23 -3.32 10.77 22.07 0.24 -3.08 16 4 C -0.10 -2.00 10.62 22.39 0.24 -1.76 16 5 C -0.11 -2.86 7.13 24.07 0.17 -2.69 16 6 C 0.60 18.43 7.90 86.44 0.68 19.11 16 7 O -0.55 -18.54 16.70 -4.32 -0.07 -18.61 16 8 N -0.51 -16.81 6.26 -176.40 -1.10 -17.92 16 9 N -0.52 -18.42 6.16 -173.53 -1.07 -19.49 16 10 C 0.52 22.99 7.27 87.65 0.64 23.62 16 11 O -0.57 -29.69 15.61 -3.02 -0.05 -29.74 16 12 C 0.01 0.32 2.30 -12.29 -0.03 0.29 16 13 H 0.08 3.26 5.29 -2.39 -0.01 3.25 16 14 C -0.13 -4.91 9.03 71.98 0.65 -4.26 16 15 C -0.51 -29.51 8.36 25.60 0.21 -29.29 16 16 H 0.03 1.97 7.61 -2.91 -0.02 1.95 16 17 C 0.01 0.70 5.47 84.65 0.46 1.16 16 18 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 19 Si 0.94 41.42 27.00 68.60 1.85 43.27 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.22 -8.28 6.81 99.48 0.68 -7.60 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 O -0.18 -4.21 10.40 -4.95 -0.05 -4.27 16 24 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.12 0.26 8.14 -2.39 -0.02 0.25 16 27 H 0.19 1.40 8.06 -2.92 -0.02 1.38 16 28 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.43 14.19 7.76 -213.33 -1.65 12.53 16 30 H 0.44 13.40 7.51 -213.32 -1.60 11.80 16 31 H 0.07 2.11 7.71 -2.39 -0.02 2.09 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -77.59 304.69 1.86 -75.72 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -2.13 Total: 26.10 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 4.19 Total: 3.88 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -1.87 Total: -96.35 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.17 Total: -52.61 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.85 Total: 43.27 kcal Total: -77.59 1.86 -75.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829831952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.599 kcal (2) G-P(sol) polarization free energy of solvation -77.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds