Wall clock time and date at job start Mon Mar 30 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 126.38772 * 2 1 4 4 C 1.41499 * 105.50410 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51686 * 179.97438 * 4 3 2 6 6 O 1.21568 * 120.00116 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99542 * 180.02562 * 5 4 3 8 8 N 1.40105 * 119.99586 * 180.02562 * 7 5 4 9 9 C 1.34774 * 120.00185 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99761 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00338 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46889 * 300.00448 * 11 9 8 13 13 C 1.53000 * 109.46939 * 59.99981 * 11 9 8 14 14 C 1.50694 * 109.47166 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 N 1.31804 * 106.96429 * 0.26446 * 4 3 2 23 23 N 1.28465 * 110.07510 * 359.55496 * 22 4 3 24 24 H 0.96997 * 124.89266 * 180.21143 * 23 22 4 25 25 H 1.09006 * 109.46961 * 89.99715 * 1 2 3 26 26 H 1.08991 * 109.47105 * 209.99935 * 1 2 3 27 27 H 1.09002 * 109.46788 * 330.00002 * 1 2 3 28 28 H 1.08005 * 127.24795 * 359.97438 * 3 2 1 29 29 H 0.96997 * 120.00646 * 359.97438 * 7 5 4 30 30 H 0.97006 * 119.99563 * 359.97438 * 8 7 5 31 31 H 1.09000 * 109.47156 * 59.99760 * 13 11 9 32 32 H 1.08997 * 109.47359 * 180.02562 * 13 11 9 33 33 H 1.09007 * 109.47356 * 300.00035 * 13 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8214 2.5956 -0.0001 7 7 6.0730 0.7608 0.0005 8 7 7.2534 1.5157 0.0007 9 6 8.4499 0.8954 0.0014 10 8 8.5049 -0.3161 0.0022 11 6 9.7195 1.7073 0.0011 12 1 9.7489 2.3354 -0.8893 13 6 9.7603 2.5905 1.2497 14 6 10.9081 0.7810 0.0026 15 1 10.7592 -0.2887 0.0032 16 6 12.1859 1.2991 0.0031 17 7 12.3673 2.6017 0.0018 18 14 13.6593 0.1508 0.0057 19 1 14.9104 0.9508 0.0053 20 1 13.6184 -0.7043 1.2191 21 1 13.6205 -0.7070 -1.2058 22 7 3.5420 -0.7296 -0.0049 23 7 2.3081 -1.0871 0.0006 24 1 1.9965 -2.0057 0.0011 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.0057 2.1260 -0.0004 29 1 6.1171 -0.2081 0.0011 30 1 7.2093 2.4847 0.0004 31 1 9.7308 1.9625 2.1401 32 1 10.6784 3.1781 1.2494 33 1 8.9005 3.2606 1.2491 34 1 13.2663 2.9661 0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831423700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:40 Heat of formation + Delta-G solvation = 26.605991 kcal Electronic energy + Delta-G solvation = -19302.512605 eV Core-core repulsion = 16045.307872 eV Total energy + Delta-G solvation = -3257.204733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 5.34 seconds Orbital eigenvalues (eV) -42.92797 -39.72994 -38.27203 -34.86160 -33.81137 -33.15715 -32.24891 -31.17122 -29.59921 -27.34117 -25.16412 -24.45554 -22.51705 -21.50986 -20.82354 -19.48722 -18.04837 -17.23342 -16.94883 -16.15273 -16.07306 -15.38631 -14.87613 -14.60897 -14.15334 -14.11966 -13.87437 -13.52646 -13.34532 -13.13408 -12.66824 -12.56180 -11.64604 -11.11201 -11.03673 -10.91402 -10.72048 -10.71225 -10.33073 -10.27649 -9.99145 -9.65795 -9.23138 -9.03142 -8.85503 -8.38502 -7.86180 -6.05520 -4.09657 1.38209 1.84094 2.22808 2.63447 3.26639 3.36401 3.38883 3.44526 3.64334 4.06905 4.33384 4.43319 4.55768 4.81740 5.04393 5.21168 5.27835 5.32185 5.40764 5.62364 5.97103 6.11669 6.60849 6.67215 6.80252 6.86225 7.10410 7.12261 7.43356 7.60462 7.74864 7.92805 8.08629 8.25078 8.33321 8.98404 9.10583 9.55725 11.02035 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.050842 B = 0.003468 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.591112 B = 8071.335186 C = 8532.753633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.011 3.989 3 C -0.173 4.173 4 C 0.001 3.999 5 C 0.597 3.403 6 O -0.538 6.538 7 N -0.507 5.507 8 N -0.537 5.537 9 C 0.522 3.478 10 O -0.543 6.543 11 C 0.044 3.956 12 H 0.060 0.940 13 C -0.137 4.137 14 C -0.505 4.505 15 H 0.076 0.924 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.256 5.256 23 N -0.379 5.379 24 H 0.445 0.555 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.434 0.566 30 H 0.428 0.572 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.016 0.984 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.822 -3.775 0.286 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.161 4.161 5 C 0.381 3.619 6 O -0.413 6.413 7 N -0.252 5.252 8 N -0.289 5.289 9 C 0.312 3.688 10 O -0.416 6.416 11 C 0.021 3.979 12 H 0.078 0.922 13 C -0.195 4.195 14 C -0.543 4.543 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.732 3.268 19 H -0.213 1.213 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.092 5.092 23 N -0.094 5.094 24 H 0.290 0.710 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.183 0.817 29 H 0.276 0.724 30 H 0.270 0.730 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.035 0.965 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.944 -4.582 0.280 22.419 hybrid contribution 0.092 -0.399 0.008 0.409 sum -21.852 -4.981 0.288 22.414 Atomic orbital electron populations 1.20356 0.86375 1.04063 1.03466 1.21483 0.95482 0.87086 1.07427 1.21503 0.90009 0.99927 1.08710 1.21619 0.94542 0.89642 1.10289 1.16805 0.80534 0.86712 0.77884 1.90806 1.86325 1.12450 1.51727 1.44669 0.97990 1.09115 1.73408 1.45849 0.95919 1.08262 1.78919 1.22647 0.83129 0.89877 0.73160 1.90556 1.86550 1.14999 1.49515 1.18896 0.86736 0.94767 0.97501 0.92218 1.21817 1.01929 0.98763 0.97022 1.21064 0.88832 0.93693 1.50738 0.90633 1.24946 0.98991 0.95279 0.94903 1.69862 1.22181 1.10655 1.50636 0.86450 0.81049 0.80467 0.78839 1.21327 1.20157 1.20154 1.73619 1.01681 1.14973 1.18936 1.43311 1.02864 1.09652 1.53571 0.71029 0.90185 0.91053 0.89383 0.81740 0.72366 0.72988 0.94683 0.88434 0.96501 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.44 36.00 0.38 0.06 16 2 C 0.01 0.09 7.23 -82.21 -0.59 -0.51 16 3 C -0.17 -1.92 10.73 -39.36 -0.42 -2.34 16 4 C 0.00 0.02 7.13 -82.77 -0.59 -0.57 16 5 C 0.60 10.03 7.94 -12.39 -0.10 9.93 16 6 O -0.54 -10.10 16.76 5.31 0.09 -10.01 16 7 N -0.51 -9.04 6.26 30.50 0.19 -8.85 16 8 N -0.54 -10.54 6.15 31.22 0.19 -10.35 16 9 C 0.52 12.10 7.26 -10.99 -0.08 12.02 16 10 O -0.54 -13.97 15.30 5.56 0.09 -13.88 16 11 C 0.04 1.09 2.64 -92.93 -0.25 0.84 16 12 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 13 C -0.14 -3.17 8.86 37.16 0.33 -2.84 16 14 C -0.50 -14.19 8.37 -34.44 -0.29 -14.48 16 15 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 18 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.26 -3.18 11.92 33.42 0.40 -2.79 16 23 N -0.38 -3.18 6.83 33.50 0.23 -2.95 16 24 H 0.45 2.00 8.96 -190.44 -1.71 0.29 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.43 7.60 7.73 -182.60 -1.41 6.19 16 30 H 0.43 7.86 7.42 -182.59 -1.35 6.51 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.02 0.32 7.56 -51.93 -0.39 -0.07 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -33.75 302.88 -7.56 -41.31 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.21 Total: 6.91 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.71 Total: 3.67 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 1.64 Total: -49.23 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.75 -7.56 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831423700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.913 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.34 seconds