Wall clock time and date at job start Mon Mar 30 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35368 * 126.38772 * 2 1 4 4 C 1.41499 * 105.50410 * 179.97438 * 3 2 1 5 5 C 1.47715 * 126.51686 * 179.97438 * 4 3 2 6 6 O 1.21568 * 120.00116 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99542 * 180.02562 * 5 4 3 8 8 N 1.40105 * 119.99586 * 180.02562 * 7 5 4 9 9 C 1.34774 * 120.00185 * 179.97438 * 8 7 5 10 10 O 1.21280 * 119.99761 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00338 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46889 * 300.00448 * 11 9 8 13 13 C 1.53000 * 109.46939 * 59.99981 * 11 9 8 14 14 C 1.50694 * 109.47166 * 179.97438 * 11 9 8 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 9 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 N 1.31804 * 106.96429 * 0.26446 * 4 3 2 23 23 N 1.28465 * 110.07510 * 359.55496 * 22 4 3 24 24 H 0.96997 * 124.89266 * 180.21143 * 23 22 4 25 25 H 1.09006 * 109.46961 * 89.99715 * 1 2 3 26 26 H 1.08991 * 109.47105 * 209.99935 * 1 2 3 27 27 H 1.09002 * 109.46788 * 330.00002 * 1 2 3 28 28 H 1.08005 * 127.24795 * 359.97438 * 3 2 1 29 29 H 0.96997 * 120.00646 * 359.97438 * 7 5 4 30 30 H 0.97006 * 119.99563 * 359.97438 * 8 7 5 31 31 H 1.09000 * 109.47156 * 59.99760 * 13 11 9 32 32 H 1.08997 * 109.47359 * 180.02562 * 13 11 9 33 33 H 1.09007 * 109.47356 * 300.00035 * 13 11 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8214 2.5956 -0.0001 7 7 6.0730 0.7608 0.0005 8 7 7.2534 1.5157 0.0007 9 6 8.4499 0.8954 0.0014 10 8 8.5049 -0.3161 0.0022 11 6 9.7195 1.7073 0.0011 12 1 9.7489 2.3354 -0.8893 13 6 9.7603 2.5905 1.2497 14 6 10.9081 0.7810 0.0026 15 1 10.7592 -0.2887 0.0032 16 6 12.1859 1.2991 0.0031 17 7 12.3673 2.6017 0.0018 18 14 13.6593 0.1508 0.0057 19 1 14.9104 0.9508 0.0053 20 1 13.6184 -0.7043 1.2191 21 1 13.6205 -0.7070 -1.2058 22 7 3.5420 -0.7296 -0.0049 23 7 2.3081 -1.0871 0.0006 24 1 1.9965 -2.0057 0.0011 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.0057 2.1260 -0.0004 29 1 6.1171 -0.2081 0.0011 30 1 7.2093 2.4847 0.0004 31 1 9.7308 1.9625 2.1401 32 1 10.6784 3.1781 1.2494 33 1 8.9005 3.2606 1.2491 34 1 13.2663 2.9661 0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831423700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:34 Heat of formation + Delta-G solvation = 0.503238 kcal Electronic energy + Delta-G solvation = -19303.644506 eV Core-core repulsion = 16045.307872 eV Total energy + Delta-G solvation = -3258.336634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -43.75719 -41.31031 -39.91890 -36.46638 -35.83600 -33.95715 -33.26326 -32.81731 -31.24750 -27.91513 -27.22507 -25.76330 -24.25679 -22.36081 -22.26073 -21.01373 -19.17280 -18.54726 -18.30570 -18.08181 -17.11254 -17.05954 -16.45470 -16.30215 -15.66574 -15.46809 -14.99581 -14.81206 -14.50605 -14.08708 -13.70553 -13.58284 -13.09676 -12.99303 -12.77767 -12.62958 -12.48352 -12.20503 -12.04179 -11.95470 -11.69242 -11.09134 -10.78526 -10.55844 -10.45823 -9.96681 -9.44689 -8.15934 -6.27360 0.32552 0.76092 1.07003 1.44245 1.45480 1.54354 1.66406 1.93607 2.20423 2.44035 2.96605 3.14233 3.35212 3.77241 3.96406 4.18331 4.43176 4.55599 4.70754 4.83484 4.89554 4.95434 5.02566 5.13279 5.31978 5.42363 5.52586 5.63967 5.72680 5.92328 6.09825 6.17157 6.52441 6.72585 6.80371 6.84843 7.33862 7.43747 8.90117 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.050842 B = 0.003468 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.591112 B = 8071.335186 C = 8532.753633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.037 3.963 3 C -0.195 4.195 4 C -0.030 4.030 5 C 0.601 3.399 6 O -0.561 6.561 7 N -0.510 5.510 8 N -0.526 5.526 9 C 0.527 3.473 10 O -0.573 6.573 11 C 0.040 3.960 12 H 0.052 0.948 13 C -0.126 4.126 14 C -0.532 4.532 15 H 0.055 0.945 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.275 5.275 23 N -0.360 5.360 24 H 0.463 0.537 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.170 0.830 29 H 0.435 0.565 30 H 0.435 0.565 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.925 -4.396 0.418 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.223 4.223 4 C -0.190 4.190 5 C 0.387 3.613 6 O -0.437 6.437 7 N -0.256 5.256 8 N -0.276 5.276 9 C 0.317 3.683 10 O -0.450 6.450 11 C 0.017 3.983 12 H 0.070 0.930 13 C -0.184 4.184 14 C -0.571 4.571 15 H 0.073 0.927 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.113 5.113 23 N -0.078 5.078 24 H 0.312 0.688 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.278 0.722 30 H 0.278 0.722 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.081 -5.183 0.412 24.636 hybrid contribution 0.562 -0.221 -0.049 0.606 sum -23.519 -5.405 0.363 24.135 Atomic orbital electron populations 1.20569 0.82786 1.05779 1.04970 1.22045 0.97203 0.85650 1.04029 1.21736 0.89211 1.01312 1.10052 1.21327 0.93981 0.90385 1.13302 1.17274 0.80813 0.86742 0.76429 1.90777 1.86742 1.13572 1.52653 1.44817 0.97373 1.09027 1.74349 1.45398 0.96252 1.08570 1.77363 1.22143 0.83782 0.89133 0.73245 1.90533 1.87119 1.16051 1.51291 1.18802 0.87051 0.94589 0.97861 0.93047 1.21650 1.02358 0.98533 0.95827 1.21214 0.90641 0.93253 1.51943 0.92711 1.25609 1.01135 0.96731 0.94344 1.69943 1.22895 1.11615 1.50394 0.85577 0.78386 0.78817 0.78652 1.20013 1.20052 1.20085 1.73541 1.03763 1.14348 1.19685 1.43437 1.01853 1.10957 1.51535 0.68835 0.88608 0.88646 0.88391 0.81200 0.72223 0.72161 0.95278 0.90352 0.93274 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.44 71.24 0.74 0.46 16 2 C 0.04 0.49 7.23 41.40 0.30 0.79 16 3 C -0.19 -4.04 10.73 22.41 0.24 -3.80 16 4 C -0.03 -0.81 7.13 42.46 0.30 -0.51 16 5 C 0.60 20.29 7.94 86.75 0.69 20.98 16 6 O -0.56 -21.14 16.76 -3.93 -0.07 -21.21 16 7 N -0.51 -18.35 6.26 -175.69 -1.10 -19.45 16 8 N -0.53 -20.79 6.15 -173.54 -1.07 -21.85 16 9 C 0.53 24.90 7.26 87.66 0.64 25.53 16 10 O -0.57 -30.23 15.30 -3.03 -0.05 -30.27 16 11 C 0.04 2.01 2.64 -12.29 -0.03 1.98 16 12 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.13 -5.82 8.86 71.98 0.64 -5.18 16 14 C -0.53 -30.53 8.37 25.60 0.21 -30.32 16 15 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 16 C 0.02 1.19 5.30 84.66 0.45 1.64 16 17 N -0.91 -50.81 11.32 21.45 0.24 -50.56 16 18 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 N -0.28 -6.56 11.92 -48.18 -0.57 -7.14 16 23 N -0.36 -5.15 6.83 -47.93 -0.33 -5.48 16 24 H 0.46 2.76 8.96 -220.00 -1.97 0.79 16 25 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 26 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.44 15.50 7.73 -213.32 -1.65 13.85 16 30 H 0.43 15.96 7.42 -213.31 -1.58 14.38 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 3.96 6.07 -2.39 -0.01 3.95 16 33 H 0.05 1.90 7.56 -2.38 -0.02 1.88 16 34 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -73.52 302.88 -0.76 -74.27 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -4.02 Total: 23.52 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 4.18 Total: 11.57 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -2.83 Total: -104.48 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.11 Total: -51.48 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.52 -0.76 -74.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831423700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds