Wall clock time and date at job start Mon Mar 30 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35366 * 126.38624 * 2 1 4 4 C 1.41501 * 105.50200 * 179.97438 * 3 2 1 5 5 C 1.47714 * 126.51714 * 180.02562 * 4 3 2 6 6 O 1.21566 * 120.00034 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.40101 * 119.99705 * 179.97438 * 7 5 4 9 9 C 1.34780 * 120.00101 * 179.97438 * 8 7 5 10 10 O 1.21279 * 119.99828 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.99868 * 180.02562 * 9 8 7 12 12 H 1.08995 * 109.47566 * 60.00144 * 11 9 8 13 13 C 1.53009 * 109.47367 * 299.99746 * 11 9 8 14 14 C 1.50704 * 109.46869 * 180.02562 * 11 9 8 15 15 H 1.07996 * 120.00462 * 5.63837 * 14 11 9 16 16 C 1.37880 * 119.99746 * 185.64384 * 14 11 9 17 17 N 1.31521 * 119.99875 * 197.11887 * 16 14 11 18 18 Si 1.86799 * 120.00363 * 17.40092 * 16 14 11 19 19 H 1.48499 * 109.47419 * 179.72169 * 18 16 14 20 20 H 1.48504 * 109.46837 * 299.72667 * 18 16 14 21 21 H 1.48505 * 109.47142 * 59.71922 * 18 16 14 22 22 N 1.31815 * 106.96522 * 0.26092 * 4 3 2 23 23 N 1.28469 * 110.06975 * 359.55703 * 22 4 3 24 24 H 0.97000 * 124.87918 * 180.21136 * 23 22 4 25 25 H 1.08994 * 109.47061 * 90.00134 * 1 2 3 26 26 H 1.09003 * 109.47042 * 210.00318 * 1 2 3 27 27 H 1.08999 * 109.47031 * 329.99815 * 1 2 3 28 28 H 1.07994 * 127.25091 * 0.02562 * 3 2 1 29 29 H 0.96993 * 120.00194 * 0.02562 * 7 5 4 30 30 H 0.97002 * 119.99700 * 0.02562 * 8 7 5 31 31 H 1.09005 * 109.46364 * 66.34747 * 13 11 9 32 32 H 1.08998 * 109.47454 * 186.34700 * 13 11 9 33 33 H 1.09002 * 109.47104 * 306.35081 * 13 11 9 34 34 H 0.97001 * 119.99482 * 355.25203 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5853 0.0006 5 6 4.8765 1.3811 0.0014 6 8 4.8214 2.5955 0.0020 7 7 6.0731 0.7608 0.0024 8 7 7.2534 1.5156 0.0026 9 6 8.4500 0.8954 0.0042 10 8 8.5049 -0.3162 0.0050 11 6 9.7195 1.7073 0.0050 12 1 9.7479 2.3364 0.8945 13 6 9.7618 2.5889 -1.2448 14 6 10.9082 0.7809 0.0061 15 1 10.7621 -0.2852 -0.0857 16 6 12.1823 1.2945 0.1244 17 7 13.2211 0.5587 -0.2058 18 14 12.4334 3.0326 0.7610 19 1 13.8855 3.3408 0.7993 20 1 11.7468 3.9935 -0.1393 21 1 11.8672 3.1452 2.1293 22 7 3.5420 -0.7297 -0.0048 23 7 2.3081 -1.0871 0.0006 24 1 1.9966 -2.0058 0.0012 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 2.0058 2.1259 0.0004 29 1 6.1170 -0.2081 0.0023 30 1 7.2093 2.4846 0.0024 31 1 8.9677 3.3337 -1.1910 32 1 10.7276 3.0910 -1.3028 33 1 9.6202 1.9702 -2.1310 34 1 13.0963 -0.3672 -0.4668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831423705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:44 Heat of formation + Delta-G solvation = -2.498075 kcal Electronic energy + Delta-G solvation = -19359.569208 eV Core-core repulsion = 16101.102428 eV Total energy + Delta-G solvation = -3258.466780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.77628 -41.39014 -39.99484 -36.52445 -35.88720 -34.02403 -33.48737 -33.04064 -31.50496 -27.93534 -26.82970 -25.83711 -24.17625 -22.37841 -22.28544 -20.94356 -19.55895 -19.08358 -18.52873 -18.27452 -17.20263 -17.08391 -16.42363 -16.04801 -15.57058 -15.46253 -15.10639 -14.82897 -14.60995 -14.10349 -13.93212 -13.71498 -13.50886 -13.11432 -13.10411 -12.48606 -12.36496 -11.99174 -11.97241 -11.72003 -11.58128 -11.01146 -10.87821 -10.58066 -10.38162 -9.98518 -9.50729 -8.79191 -6.38558 0.30016 0.70416 1.05232 1.51501 1.56955 1.62757 1.79262 1.91472 2.17537 2.54601 2.91483 3.08350 3.28885 3.74110 3.91232 4.06211 4.40356 4.40759 4.53904 4.62980 4.78866 4.82089 5.01022 5.09527 5.12089 5.30629 5.44572 5.48733 5.57799 5.82769 6.05461 6.08969 6.46787 6.59767 6.68564 6.81511 7.29521 7.42939 8.62553 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049711 B = 0.003626 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.123741 B = 7720.069746 C = 8118.302896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.037 3.963 3 C -0.194 4.194 4 C -0.031 4.031 5 C 0.604 3.396 6 O -0.557 6.557 7 N -0.512 5.512 8 N -0.522 5.522 9 C 0.530 3.470 10 O -0.577 6.577 11 C 0.011 3.989 12 H 0.078 0.922 13 C -0.144 4.144 14 C -0.602 4.602 15 H 0.020 0.980 16 C -0.020 4.020 17 N -0.935 5.935 18 Si 1.084 2.916 19 H -0.291 1.291 20 H -0.224 1.224 21 H -0.260 1.260 22 N -0.278 5.278 23 N -0.361 5.361 24 H 0.463 0.537 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.172 0.828 29 H 0.434 0.566 30 H 0.439 0.561 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.941 2.838 0.689 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.222 4.222 4 C -0.191 4.191 5 C 0.390 3.610 6 O -0.433 6.433 7 N -0.258 5.258 8 N -0.273 5.273 9 C 0.319 3.681 10 O -0.453 6.453 11 C -0.012 4.012 12 H 0.095 0.905 13 C -0.202 4.202 14 C -0.640 4.640 15 H 0.038 0.962 16 C -0.217 4.217 17 N -0.570 5.570 18 Si 0.903 3.097 19 H -0.218 1.218 20 H -0.147 1.147 21 H -0.184 1.184 22 N -0.116 5.116 23 N -0.079 5.079 24 H 0.311 0.689 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.190 0.810 29 H 0.276 0.724 30 H 0.283 0.717 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -27.106 3.028 0.965 27.292 hybrid contribution -1.076 -1.915 -0.400 2.233 sum -28.182 1.113 0.565 28.210 Atomic orbital electron populations 1.20571 0.82800 1.05789 1.04968 1.22062 0.97217 0.85667 1.04014 1.21739 0.89132 1.01323 1.09977 1.21356 0.94078 0.90356 1.13299 1.17230 0.80690 0.86753 0.76356 1.90772 1.86697 1.13348 1.52515 1.44844 0.97404 1.09041 1.74521 1.45302 0.96085 1.08638 1.77236 1.21820 0.83732 0.88966 0.73557 1.90576 1.87064 1.16597 1.51082 1.19178 0.88089 0.95350 0.98606 0.90469 1.22153 1.02977 0.98433 0.96602 1.22001 0.92551 0.93452 1.55981 0.96208 1.27482 0.91340 1.10098 0.92784 1.70999 1.33719 1.09006 1.43289 0.83647 0.76740 0.70845 0.78475 1.21753 1.14737 1.18444 1.73556 1.03797 1.14483 1.19747 1.43446 1.01874 1.10982 1.51555 0.68891 0.88618 0.88722 0.88307 0.81025 0.72357 0.71728 0.90351 0.91390 0.94342 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.44 71.24 0.74 0.50 16 2 C 0.04 0.46 7.23 41.40 0.30 0.76 16 3 C -0.19 -3.80 10.73 22.41 0.24 -3.56 16 4 C -0.03 -0.80 7.13 42.46 0.30 -0.50 16 5 C 0.60 19.26 7.94 86.75 0.69 19.95 16 6 O -0.56 -19.52 16.76 -3.92 -0.07 -19.58 16 7 N -0.51 -17.64 6.26 -175.69 -1.10 -18.73 16 8 N -0.52 -19.13 6.16 -173.54 -1.07 -20.20 16 9 C 0.53 24.09 7.26 87.65 0.64 24.73 16 10 O -0.58 -31.12 15.31 -3.03 -0.05 -31.16 16 11 C 0.01 0.51 2.22 -12.28 -0.03 0.48 16 12 H 0.08 3.20 6.80 -2.39 -0.02 3.18 16 13 C -0.14 -5.63 8.72 71.99 0.63 -5.01 16 14 C -0.60 -35.52 8.63 25.60 0.22 -35.29 16 15 H 0.02 1.36 7.02 -2.91 -0.02 1.34 16 16 C -0.02 -1.15 5.29 84.65 0.45 -0.70 16 17 N -0.93 -59.79 13.70 21.45 0.29 -59.50 16 18 Si 1.08 47.18 26.29 68.60 1.80 48.98 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.22 -8.04 5.76 99.48 0.57 -7.47 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 22 N -0.28 -6.50 11.92 -48.17 -0.57 -7.07 16 23 N -0.36 -5.04 6.83 -47.92 -0.33 -5.37 16 24 H 0.46 2.72 8.96 -219.99 -1.97 0.75 16 25 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.43 15.21 7.73 -213.33 -1.65 13.56 16 30 H 0.44 13.97 7.55 -213.32 -1.61 12.36 16 31 H 0.08 2.33 7.75 -2.38 -0.02 2.31 16 32 H 0.07 2.68 4.87 -2.39 -0.01 2.67 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 Total: -1.00 -83.13 298.81 -1.12 -84.26 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -4.22 Total: 27.01 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.18 Total: 1.37 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -2.78 Total: -110.87 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.80 Total: 48.98 kcal Total: -83.13 -1.12 -84.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831423705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.759 kcal (2) G-P(sol) polarization free energy of solvation -83.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds