Wall clock time and date at job start Mon Mar 30 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48496 * 109.47136 * 239.99864 * 3 2 1 5 5 H 1.48499 * 109.47405 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46826 * 119.99881 * 3 2 1 7 7 C 1.37867 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00549 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47356 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47281 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.21271 * 120.00153 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99719 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99698 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47204 * 179.97438 * 15 14 12 17 17 C 1.38147 * 119.59404 * 95.00283 * 16 15 14 18 18 C 1.38712 * 119.22070 * 180.02562 * 17 16 15 19 19 C 1.38548 * 118.45174 * 0.27936 * 18 17 16 20 20 C 1.38522 * 119.13580 * 359.45004 * 19 18 17 21 21 F 1.35100 * 119.65073 * 180.27548 * 20 19 18 22 22 N 1.31901 * 119.60933 * 275.02714 * 16 15 14 23 23 H 0.96997 * 120.00680 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46769 * 59.99799 * 9 7 2 25 25 H 1.08994 * 109.47331 * 300.00429 * 9 7 2 26 26 H 1.09002 * 109.47270 * 60.00199 * 10 9 7 27 27 H 1.09007 * 109.47098 * 300.00310 * 10 9 7 28 28 H 1.09002 * 109.47116 * 59.99725 * 11 10 9 29 29 H 1.09007 * 109.46998 * 299.99992 * 11 10 9 30 30 H 0.97001 * 119.99920 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47190 * 60.00383 * 15 14 12 32 32 H 1.08994 * 109.47528 * 300.00635 * 15 14 12 33 33 H 1.08001 * 120.39320 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.77240 * 179.97438 * 18 17 16 35 35 H 1.07999 * 120.43302 * 179.70248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4599 -6.1324 -0.0031 13 8 3.6521 -5.9108 -0.0035 14 7 2.0106 -7.4032 -0.0032 15 6 2.9627 -8.5166 -0.0044 16 6 2.2093 -9.8218 -0.0036 17 6 1.9575 -10.4649 -1.2001 18 6 1.2629 -11.6656 -1.1904 19 6 0.8404 -12.1739 0.0272 20 6 1.1339 -11.4766 1.1876 21 9 0.7318 -11.9657 2.3810 22 7 1.7977 -10.3360 1.1391 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8728 -3.6047 0.8877 27 1 2.8714 -3.6038 -0.8923 28 1 0.8534 -5.0442 -0.8922 29 1 0.8542 -5.0455 0.8878 30 1 1.0569 -7.5804 -0.0033 31 1 3.5900 -8.4592 0.8851 32 1 3.5887 -8.4585 -0.8947 33 1 2.2968 -10.0375 -2.1321 34 1 1.0521 -12.1894 -2.1111 35 1 0.2930 -13.1038 0.0715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846929119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:39 Heat of formation + Delta-G solvation = -61.395707 kcal Electronic energy + Delta-G solvation = -18521.116206 eV Core-core repulsion = 15240.175471 eV Total energy + Delta-G solvation = -3280.940735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.39916 -40.75830 -39.33298 -35.16560 -34.13445 -33.16459 -32.11615 -31.53504 -28.35286 -26.67979 -23.98352 -23.82540 -22.64335 -20.67725 -19.80156 -18.33040 -17.66498 -16.77422 -16.63346 -16.54103 -16.08062 -15.76885 -15.48130 -14.61014 -14.41423 -14.02749 -13.69562 -13.62673 -13.53092 -13.12741 -12.62629 -12.50074 -12.23486 -11.79146 -11.30846 -10.76412 -10.61736 -10.57291 -10.53122 -10.18651 -9.80371 -9.65267 -9.46707 -9.22410 -9.10006 -8.99713 -8.29621 -5.95449 -3.96926 0.31208 0.57446 2.86090 2.90163 3.01391 3.38340 3.41615 3.45124 3.50084 3.88026 4.11031 4.38267 4.45880 4.51236 4.81897 5.07348 5.13478 5.21806 5.40520 5.42860 5.51178 5.55618 5.73571 5.74515 6.06783 6.26158 6.35946 6.75184 6.95405 7.15424 7.18673 7.53141 7.73223 7.86284 8.05290 8.41115 8.49274 9.10059 9.66941 11.16070 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.002674 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.731638 B =10468.312028 C =10629.853155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.516 3.484 13 O -0.535 6.535 14 N -0.735 5.735 15 C 0.170 3.830 16 C 0.149 3.851 17 C -0.165 4.165 18 C -0.046 4.046 19 C -0.191 4.191 20 C 0.309 3.691 21 F -0.111 7.111 22 N -0.500 5.500 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.401 0.599 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -27.123 -3.284 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.304 3.696 13 O -0.411 6.411 14 N -0.389 5.389 15 C 0.045 3.955 16 C 0.012 3.988 17 C -0.185 4.185 18 C -0.072 4.072 19 C -0.212 4.212 20 C 0.155 3.845 21 F -0.090 7.090 22 N -0.215 5.215 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.764 -26.414 -2.453 26.539 hybrid contribution -0.403 0.120 -0.398 0.579 sum 0.361 -26.294 -2.851 26.451 Atomic orbital electron populations 1.69949 1.06040 1.26647 1.51167 1.25016 0.94854 0.99238 0.95395 0.86650 0.79566 0.83067 0.78683 1.20235 1.21353 1.20219 1.21242 0.93170 0.91036 1.50225 0.92607 1.19129 0.93970 0.91442 0.97129 1.21455 0.98651 0.91470 1.01743 1.21852 0.98110 0.93901 1.03869 1.21293 0.90466 0.83347 0.74470 1.90684 1.17291 1.84540 1.48547 1.46062 1.09831 1.05233 1.77782 1.20102 0.90887 0.80228 1.04245 1.21014 0.94783 0.96047 0.87000 1.22139 1.00368 0.96353 0.99658 1.21554 0.93283 0.94398 0.97960 1.21917 1.04466 1.02911 0.91913 1.18142 0.94725 0.90354 0.81272 1.91652 1.87440 1.85653 1.44258 1.66810 1.11691 1.11327 1.31635 0.93018 0.96613 0.96595 0.92641 0.92654 0.89277 0.89257 0.76554 0.89463 0.89273 0.83328 0.83261 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 12 C 0.52 8.18 7.83 -10.98 -0.09 8.09 16 13 O -0.54 -10.52 15.98 5.56 0.09 -10.43 16 14 N -0.73 -8.66 5.55 -61.48 -0.34 -9.00 16 15 C 0.17 1.78 5.98 -5.19 -0.03 1.75 16 16 C 0.15 1.37 6.15 -82.59 -0.51 0.86 16 17 C -0.16 -1.04 9.72 -39.44 -0.38 -1.42 16 18 C -0.05 -0.23 10.17 -39.29 -0.40 -0.63 16 19 C -0.19 -1.18 10.09 -39.36 -0.40 -1.58 16 20 C 0.31 2.95 8.41 -17.35 -0.15 2.80 16 21 F -0.11 -1.15 17.29 2.25 0.04 -1.11 16 22 N -0.50 -5.53 10.29 -9.81 -0.10 -5.64 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.40 3.90 8.46 -40.82 -0.35 3.56 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 35 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -34.65 314.91 -7.16 -41.81 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -4.53 Total: -2.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.78 Total: -8.22 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.29 Total: -41.18 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.65 -7.16 -41.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846929119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.590 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds