Wall clock time and date at job start Mon Mar 30 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48496 * 109.47136 * 239.99864 * 3 2 1 5 5 H 1.48499 * 109.47405 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46826 * 119.99881 * 3 2 1 7 7 C 1.37867 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00549 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47356 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47281 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47180 * 180.02562 * 11 10 9 13 13 O 1.21271 * 120.00153 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99719 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99698 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47204 * 179.97438 * 15 14 12 17 17 C 1.38147 * 119.59404 * 95.00283 * 16 15 14 18 18 C 1.38712 * 119.22070 * 180.02562 * 17 16 15 19 19 C 1.38548 * 118.45174 * 0.27936 * 18 17 16 20 20 C 1.38522 * 119.13580 * 359.45004 * 19 18 17 21 21 F 1.35100 * 119.65073 * 180.27548 * 20 19 18 22 22 N 1.31901 * 119.60933 * 275.02714 * 16 15 14 23 23 H 0.96997 * 120.00680 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46769 * 59.99799 * 9 7 2 25 25 H 1.08994 * 109.47331 * 300.00429 * 9 7 2 26 26 H 1.09002 * 109.47270 * 60.00199 * 10 9 7 27 27 H 1.09007 * 109.47098 * 300.00310 * 10 9 7 28 28 H 1.09002 * 109.47116 * 59.99725 * 11 10 9 29 29 H 1.09007 * 109.46998 * 299.99992 * 11 10 9 30 30 H 0.97001 * 119.99920 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47190 * 60.00383 * 15 14 12 32 32 H 1.08994 * 109.47528 * 300.00635 * 15 14 12 33 33 H 1.08001 * 120.39320 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.77240 * 179.97438 * 18 17 16 35 35 H 1.07999 * 120.43302 * 179.70248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4599 -6.1324 -0.0031 13 8 3.6521 -5.9108 -0.0035 14 7 2.0106 -7.4032 -0.0032 15 6 2.9627 -8.5166 -0.0044 16 6 2.2093 -9.8218 -0.0036 17 6 1.9575 -10.4649 -1.2001 18 6 1.2629 -11.6656 -1.1904 19 6 0.8404 -12.1739 0.0272 20 6 1.1339 -11.4766 1.1876 21 9 0.7318 -11.9657 2.3810 22 7 1.7977 -10.3360 1.1391 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8728 -3.6047 0.8877 27 1 2.8714 -3.6038 -0.8923 28 1 0.8534 -5.0442 -0.8922 29 1 0.8542 -5.0455 0.8878 30 1 1.0569 -7.5804 -0.0033 31 1 3.5900 -8.4592 0.8851 32 1 3.5887 -8.4585 -0.8947 33 1 2.2968 -10.0375 -2.1321 34 1 1.0521 -12.1894 -2.1111 35 1 0.2930 -13.1038 0.0715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846929119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:38 Heat of formation + Delta-G solvation = -85.494886 kcal Electronic energy + Delta-G solvation = -18522.161225 eV Core-core repulsion = 15240.175471 eV Total energy + Delta-G solvation = -3281.985754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.07750 -41.42903 -40.52638 -36.34991 -35.90091 -34.04253 -33.72500 -32.39522 -29.93437 -27.82149 -25.59369 -24.52689 -23.46002 -22.27032 -21.27227 -19.05696 -18.64926 -18.20851 -17.67378 -17.23489 -17.11748 -16.83001 -16.75574 -16.47237 -15.43001 -15.07963 -14.84639 -14.60021 -14.23135 -14.15566 -13.88095 -13.74961 -13.72911 -13.08161 -13.02974 -12.58761 -12.49972 -12.41484 -11.53763 -11.46314 -11.27970 -11.11970 -10.90465 -10.72792 -10.53209 -10.18102 -10.02695 -8.19283 -6.29371 -0.24489 0.06440 1.40278 1.43318 1.51345 1.63810 2.06526 2.41123 2.42475 2.67418 3.13663 3.27551 3.62041 3.87106 3.92479 4.03372 4.22628 4.27302 4.32813 4.45576 4.65860 4.69991 4.83176 4.96136 4.98858 5.05404 5.12216 5.20193 5.33116 5.55454 5.56223 5.77029 5.88192 6.28288 6.46620 6.56474 6.86222 7.21739 7.39298 8.92138 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043758 B = 0.002674 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.731638 B =10468.312028 C =10629.853155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.521 3.479 13 O -0.579 6.579 14 N -0.715 5.715 15 C 0.171 3.829 16 C 0.130 3.870 17 C -0.152 4.152 18 C -0.035 4.035 19 C -0.176 4.176 20 C 0.277 3.723 21 F -0.126 7.126 22 N -0.539 5.539 23 H 0.265 0.735 24 H 0.003 0.997 25 H -0.001 1.001 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.413 0.587 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.192 0.808 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -28.496 -4.910 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.309 3.691 13 O -0.458 6.458 14 N -0.368 5.368 15 C 0.047 3.953 16 C -0.007 4.007 17 C -0.172 4.172 18 C -0.060 4.060 19 C -0.197 4.197 20 C 0.123 3.877 21 F -0.105 7.105 22 N -0.255 5.255 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.249 0.751 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.191 0.809 34 H 0.209 0.791 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.422 -27.830 -4.078 28.131 hybrid contribution -0.347 0.459 0.089 0.583 sum 0.075 -27.371 -3.990 27.660 Atomic orbital electron populations 1.70058 1.07529 1.27862 1.51595 1.25911 0.95824 1.03096 0.94693 0.85553 0.78384 0.78360 0.79086 1.19280 1.20399 1.19513 1.21684 0.93400 0.92824 1.50747 0.92957 1.19020 0.94224 0.92407 0.95503 1.21168 0.97630 0.92842 1.00441 1.21681 0.97922 0.91626 1.05751 1.21015 0.89435 0.84378 0.74257 1.90672 1.18839 1.85311 1.51024 1.45834 1.10867 1.04383 1.75716 1.20129 0.90701 0.80590 1.03844 1.20824 0.96218 0.95875 0.87781 1.22431 0.99131 0.96414 0.99269 1.22053 0.91479 0.93589 0.98912 1.22271 1.03211 1.03160 0.91013 1.18512 0.96241 0.90967 0.81931 1.91608 1.87785 1.85809 1.45340 1.66600 1.12934 1.12735 1.33201 0.92660 0.97901 0.98306 0.94232 0.93654 0.86960 0.87847 0.75095 0.91677 0.87905 0.80876 0.79103 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.44 0.28 -56.59 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.55 -32.48 9.11 25.60 0.23 -32.25 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.08 -3.64 4.44 30.59 0.14 -3.51 16 11 C -0.13 -4.21 5.70 29.85 0.17 -4.04 16 12 C 0.52 16.30 7.83 87.66 0.69 16.99 16 13 O -0.58 -23.06 15.98 -3.00 -0.05 -23.11 16 14 N -0.71 -16.17 5.55 -466.80 -2.59 -18.76 16 15 C 0.17 3.50 5.98 85.63 0.51 4.01 16 16 C 0.13 2.22 6.15 42.53 0.26 2.48 16 17 C -0.15 -1.43 9.72 22.36 0.22 -1.21 16 18 C -0.04 -0.20 10.17 22.46 0.23 0.03 16 19 C -0.18 -1.67 10.09 22.41 0.23 -1.45 16 20 C 0.28 5.09 8.41 84.73 0.71 5.80 16 21 F -0.13 -2.65 17.29 44.97 0.78 -1.87 16 22 N -0.54 -11.85 10.29 -184.95 -1.90 -13.75 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.00 0.14 8.14 -2.39 -0.02 0.13 16 25 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 27 H 0.04 2.06 8.10 -2.38 -0.02 2.04 16 28 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 30 H 0.41 7.40 8.46 -92.71 -0.78 6.62 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.82 8.04 -2.39 -0.02 1.80 16 33 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 35 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -77.30 314.91 2.86 -74.44 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.32 Total: 3.21 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 3.99 Total: -11.01 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -4.21 Total: -89.10 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.30 2.86 -74.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846929119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.058 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds