Wall clock time and date at job start Mon Mar 30 2020 04:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47014 * 269.99594 * 3 2 1 5 5 H 1.48496 * 109.47340 * 29.99784 * 3 2 1 6 6 H 1.48506 * 109.47049 * 149.99882 * 3 2 1 7 7 C 1.37882 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46608 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46924 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00173 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00252 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00358 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47249 * 180.02562 * 15 14 12 17 17 C 1.38544 * 120.43020 * 104.97610 * 16 15 14 18 18 C 1.38706 * 118.45102 * 180.02562 * 17 16 15 19 19 C 1.38142 * 119.22513 * 0.02562 * 18 17 16 20 20 N 1.31914 * 120.79358 * 359.97438 * 19 18 17 21 21 C 1.32052 * 121.68910 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.65167 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99904 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47095 * 59.99588 * 9 7 2 25 25 H 1.09002 * 109.47133 * 299.99399 * 9 7 2 26 26 H 1.08998 * 109.47560 * 59.99945 * 10 9 7 27 27 H 1.08994 * 109.47066 * 299.99386 * 10 9 7 28 28 H 1.08999 * 109.47462 * 60.00468 * 11 10 9 29 29 H 1.09002 * 109.47255 * 299.99412 * 11 10 9 30 30 H 0.97001 * 119.99912 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47224 * 60.00166 * 15 14 12 32 32 H 1.09002 * 109.46747 * 300.00135 * 15 14 12 33 33 H 1.08000 * 120.78068 * 0.04686 * 17 16 15 34 34 H 1.08004 * 120.38672 * 180.02562 * 18 17 16 35 35 H 1.07999 * 119.60747 * 180.27198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1325 0.0005 13 8 3.6519 -5.9110 0.0001 14 7 2.0102 -7.4032 0.0015 15 6 2.9622 -8.5168 0.0014 16 6 2.2087 -9.8219 0.0019 17 6 2.1248 -10.5842 -1.1519 18 6 1.4205 -11.7782 -1.1053 19 6 0.8289 -12.1664 0.0811 20 7 0.9279 -11.4169 1.1621 21 6 1.5900 -10.2744 1.1558 22 9 1.6649 -9.5389 2.2866 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8904 26 1 2.8720 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0446 0.8915 30 1 1.0566 -7.5805 0.0022 31 1 3.5894 -8.4587 0.8910 32 1 3.5883 -8.4595 -0.8890 33 1 2.5971 -10.2566 -2.0663 34 1 1.3356 -12.3972 -1.9863 35 1 0.2828 -13.0971 0.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847001130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:56 Heat of formation + Delta-G solvation = -62.203821 kcal Electronic energy + Delta-G solvation = -18804.726757 eV Core-core repulsion = 15523.750979 eV Total energy + Delta-G solvation = -3280.975777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.35094 -40.64285 -39.39184 -35.52286 -34.14861 -33.00981 -32.05960 -31.46901 -28.28214 -26.52913 -24.12794 -23.80710 -22.57580 -20.68713 -19.79273 -18.46197 -17.77403 -17.14835 -16.59185 -16.12354 -15.97308 -15.55370 -15.46428 -14.57626 -14.37769 -14.15307 -13.78609 -13.60187 -13.54833 -13.30823 -12.75095 -12.33771 -12.23635 -11.78661 -11.31798 -10.79156 -10.61550 -10.53457 -10.51887 -10.17989 -9.80439 -9.66246 -9.45906 -9.22353 -9.10322 -8.98708 -8.30352 -5.96049 -3.97379 0.32169 0.57805 2.89388 2.95703 3.10871 3.36042 3.41125 3.42149 3.47105 3.93895 4.13143 4.27542 4.38780 4.50847 4.82189 5.02654 5.16783 5.27003 5.40025 5.41400 5.49120 5.58708 5.72821 5.73903 6.06860 6.25532 6.35162 6.74493 6.94768 7.12225 7.18014 7.52019 7.72914 7.85741 8.04806 8.40182 8.48830 9.09809 9.66489 11.15522 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046212 B = 0.002858 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.759725 B = 9794.720385 C = 9886.460227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.515 3.485 13 O -0.535 6.535 14 N -0.738 5.738 15 C 0.166 3.834 16 C -0.179 4.179 17 C -0.029 4.029 18 C -0.185 4.185 19 C 0.140 3.860 20 N -0.515 5.515 21 C 0.323 3.677 22 F -0.104 7.104 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -26.736 -3.010 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.304 3.696 13 O -0.411 6.411 14 N -0.392 5.392 15 C 0.042 3.958 16 C -0.183 4.183 17 C -0.056 4.056 18 C -0.205 4.205 19 C -0.017 4.017 20 N -0.229 5.229 21 C 0.169 3.831 22 F -0.083 7.083 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.093 -26.664 -2.178 26.775 hybrid contribution 0.248 1.079 -0.498 1.214 sum 1.341 -25.586 -2.677 25.760 Atomic orbital electron populations 1.69962 1.06043 1.26533 1.51237 1.25025 0.94857 0.99257 0.95406 0.86588 0.79908 0.83418 0.78081 1.20690 1.21266 1.19831 1.21278 0.93198 0.91019 1.50104 0.92566 1.19134 0.93974 0.91456 0.97138 1.21451 0.98645 0.91480 1.01721 1.21856 0.98123 0.93940 1.03861 1.21303 0.90462 0.83425 0.74438 1.90683 1.17297 1.84594 1.48529 1.46171 1.09798 1.05406 1.77804 1.19989 0.91004 0.80918 1.03926 1.20762 1.03775 1.00028 0.93696 1.21558 0.94134 0.92596 0.97273 1.22239 1.00023 0.97998 1.00255 1.22637 0.94825 0.97593 0.86657 1.67102 1.18138 1.05148 1.32503 1.18083 0.94502 0.88235 0.82250 1.91683 1.93636 1.73861 1.49082 0.93074 0.96623 0.96569 0.92650 0.92682 0.89311 0.89233 0.76655 0.90064 0.89884 0.83288 0.83521 0.81381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.07 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.29 5.70 -27.88 -0.16 -2.45 16 12 C 0.52 8.24 7.83 -10.99 -0.09 8.15 16 13 O -0.54 -10.61 15.98 5.56 0.09 -10.52 16 14 N -0.74 -8.74 5.55 -61.47 -0.34 -9.08 16 15 C 0.17 1.72 5.51 -5.19 -0.03 1.69 16 16 C -0.18 -1.54 5.27 -104.41 -0.55 -2.09 16 17 C -0.03 -0.18 9.81 -39.30 -0.39 -0.56 16 18 C -0.19 -0.89 10.11 -39.44 -0.40 -1.28 16 19 C 0.14 0.88 11.18 -17.55 -0.20 0.68 16 20 N -0.51 -5.13 10.37 -13.59 -0.14 -5.28 16 21 C 0.32 3.38 8.37 -17.35 -0.15 3.23 16 22 F -0.10 -1.27 16.79 2.25 0.04 -1.23 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.40 3.92 8.46 -40.82 -0.35 3.57 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 33 H 0.15 0.59 8.05 -52.49 -0.42 0.16 16 34 H 0.15 0.27 8.06 -52.48 -0.42 -0.16 16 35 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -35.04 314.12 -7.05 -42.09 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.52 Total: -2.95 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.62 Total: -8.34 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.25 Total: -40.93 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.04 -7.05 -42.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847001130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.117 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds