Wall clock time and date at job start Mon Mar 30 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48496 * 109.47014 * 269.99594 * 3 2 1 5 5 H 1.48496 * 109.47340 * 29.99784 * 3 2 1 6 6 H 1.48506 * 109.47049 * 149.99882 * 3 2 1 7 7 C 1.37882 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46608 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46924 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00173 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00252 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00358 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47249 * 180.02562 * 15 14 12 17 17 C 1.38544 * 120.43020 * 104.97610 * 16 15 14 18 18 C 1.38706 * 118.45102 * 180.02562 * 17 16 15 19 19 C 1.38142 * 119.22513 * 0.02562 * 18 17 16 20 20 N 1.31914 * 120.79358 * 359.97438 * 19 18 17 21 21 C 1.32052 * 121.68910 * 0.02562 * 20 19 18 22 22 F 1.35104 * 119.65167 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99904 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47095 * 59.99588 * 9 7 2 25 25 H 1.09002 * 109.47133 * 299.99399 * 9 7 2 26 26 H 1.08998 * 109.47560 * 59.99945 * 10 9 7 27 27 H 1.08994 * 109.47066 * 299.99386 * 10 9 7 28 28 H 1.08999 * 109.47462 * 60.00468 * 11 10 9 29 29 H 1.09002 * 109.47255 * 299.99412 * 11 10 9 30 30 H 0.97001 * 119.99912 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47224 * 60.00166 * 15 14 12 32 32 H 1.09002 * 109.46747 * 300.00135 * 15 14 12 33 33 H 1.08000 * 120.78068 * 0.04686 * 17 16 15 34 34 H 1.08004 * 120.38672 * 180.02562 * 18 17 16 35 35 H 1.07999 * 119.60747 * 180.27198 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4595 -6.1325 0.0005 13 8 3.6519 -5.9110 0.0001 14 7 2.0102 -7.4032 0.0015 15 6 2.9622 -8.5168 0.0014 16 6 2.2087 -9.8219 0.0019 17 6 2.1248 -10.5842 -1.1519 18 6 1.4205 -11.7782 -1.1053 19 6 0.8289 -12.1664 0.0811 20 7 0.9279 -11.4169 1.1621 21 6 1.5900 -10.2744 1.1558 22 9 1.6649 -9.5389 2.2866 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8904 26 1 2.8720 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0446 0.8915 30 1 1.0566 -7.5805 0.0022 31 1 3.5894 -8.4587 0.8910 32 1 3.5883 -8.4595 -0.8890 33 1 2.5971 -10.2566 -2.0663 34 1 1.3356 -12.3972 -1.9863 35 1 0.2828 -13.0971 0.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847001130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:53 Heat of formation + Delta-G solvation = -86.628445 kcal Electronic energy + Delta-G solvation = -18805.785888 eV Core-core repulsion = 15523.750979 eV Total energy + Delta-G solvation = -3282.034908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -50.13349 -41.29417 -40.58095 -36.58097 -36.01369 -34.08679 -33.64264 -32.20291 -29.91779 -27.64849 -25.57148 -24.68995 -23.37735 -22.28128 -21.27979 -19.11101 -18.69886 -18.38768 -17.92652 -17.43101 -16.88413 -16.79066 -16.49412 -16.22862 -15.37658 -15.21944 -14.83813 -14.65184 -14.24893 -14.18966 -14.02063 -13.91695 -13.76301 -13.09540 -12.90792 -12.61155 -12.51591 -12.40048 -11.55607 -11.48355 -11.29925 -11.17129 -10.79400 -10.73343 -10.54352 -10.21671 -9.97906 -8.20281 -6.30295 -0.24529 0.06488 1.39648 1.40935 1.52515 1.61745 2.14672 2.41922 2.51852 2.63380 3.12710 3.30743 3.53313 3.79777 3.88176 3.95855 4.21637 4.26168 4.38111 4.51648 4.57338 4.75576 4.81300 4.95061 4.97173 5.07251 5.10739 5.18819 5.31988 5.54525 5.56915 5.75634 5.87053 6.27248 6.44653 6.59219 6.85380 7.19760 7.38395 8.91382 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.046212 B = 0.002858 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.759725 B = 9794.720385 C = 9886.460227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.520 3.480 13 O -0.579 6.579 14 N -0.718 5.718 15 C 0.167 3.833 16 C -0.181 4.181 17 C -0.026 4.026 18 C -0.165 4.165 19 C 0.134 3.866 20 N -0.546 5.546 21 C 0.293 3.707 22 F -0.127 7.127 23 H 0.265 0.735 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.187 0.813 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -28.249 -4.565 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.308 3.692 13 O -0.459 6.459 14 N -0.371 5.371 15 C 0.043 3.957 16 C -0.185 4.185 17 C -0.052 4.052 18 C -0.185 4.185 19 C -0.022 4.022 20 N -0.261 5.261 21 C 0.140 3.860 22 F -0.106 7.106 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.193 0.807 34 H 0.204 0.796 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.941 -28.222 -3.734 28.483 hybrid contribution 0.224 1.405 -0.062 1.424 sum 1.165 -26.817 -3.797 27.109 Atomic orbital electron populations 1.70068 1.07536 1.27803 1.51634 1.25923 0.95832 1.03125 0.94690 0.85487 0.78598 0.78626 0.78595 1.19579 1.20351 1.19291 1.21703 0.93380 0.92800 1.50676 0.92983 1.19024 0.94221 0.92426 0.95502 1.21163 0.97625 0.92836 1.00419 1.21689 0.97954 0.91713 1.05715 1.21024 0.89432 0.84468 0.74237 1.90671 1.18823 1.85362 1.51017 1.45963 1.10869 1.04568 1.75724 1.20017 0.90828 0.81209 1.03604 1.20585 1.04179 0.99531 0.94247 1.21932 0.93703 0.92538 0.97029 1.22671 0.97589 0.97330 1.00865 1.23313 0.94557 0.98009 0.86295 1.67091 1.18965 1.05498 1.34578 1.18318 0.96352 0.89038 0.82263 1.91616 1.94040 1.74551 1.50381 0.92657 0.97955 0.98257 0.94196 0.93720 0.87106 0.87776 0.75209 0.91807 0.88812 0.80731 0.79569 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -32.53 9.11 25.60 0.23 -32.30 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.52 16 11 C -0.13 -4.30 5.70 29.85 0.17 -4.13 16 12 C 0.52 16.48 7.83 87.66 0.69 17.16 16 13 O -0.58 -23.25 15.98 -3.04 -0.05 -23.29 16 14 N -0.72 -16.43 5.55 -466.78 -2.59 -19.02 16 15 C 0.17 3.35 5.51 85.63 0.47 3.83 16 16 C -0.18 -2.89 5.27 -19.72 -0.10 -2.99 16 17 C -0.03 -0.23 9.81 22.45 0.22 -0.01 16 18 C -0.17 -0.91 10.11 22.36 0.23 -0.68 16 19 C 0.13 1.31 11.18 84.66 0.95 2.26 16 20 N -0.55 -10.40 10.37 -196.92 -2.04 -12.44 16 21 C 0.29 6.08 8.37 84.73 0.71 6.79 16 22 F -0.13 -3.25 16.79 44.97 0.76 -2.49 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.04 2.04 8.10 -2.39 -0.02 2.03 16 28 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.41 7.53 8.46 -92.71 -0.78 6.74 16 31 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 33 H 0.18 0.63 8.05 -2.91 -0.02 0.61 16 34 H 0.19 -0.41 8.06 -2.91 -0.02 -0.44 16 35 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -78.00 314.12 3.01 -74.99 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.32 Total: 2.89 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.31 Total: -11.50 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -4.35 Total: -88.16 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.29 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.76 Total: -2.49 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -78.00 3.01 -74.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847001130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.634 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds